On Wed, Mar 2, 2011 at 3:42 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
P.S. I do like the color highlighting and live substitution of
the workflow parameters into each tool step that uses them.
Very slick!
That was the good news. Now the bad news - two bug reports.
Firstly if you clear the workflow parameter (leaving it empty), then
the caption is used for the highlighted placeholders BUT only the
first word is used, e.g.
${Minimum read length (after any clipping)}
Initially the the placeholders show Minimum read length (after any
clipping), and if you enter a value like 30 then 30 is shown. If
you then edit the field to become empty, the placeholder now
shows just Minimum.
Furthermore, if I leave my workflow parameters empty, and
press execute, I get a traceback ending with:
AttributeError: 'WorkflowStep' object has no attribute 'module'
Since an empty value is valid for some tools for some parameters
(e.g. optional text fields) I would have expected any error later -
from the tools themselves if they don't like the empty value.
Peter
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