Re: [galaxy-dev] Possible Galaxy memory leak?

2012-03-06 Thread Nate Coraor
There is also a memory leak that occurs when using the pbs job runner. I believe the leak is somewhere in libtorque or pbs_python but I have not yet tracked it down. --nate On Feb 29, 2012, at 3:28 PM, John Chilton wrote: We had intermittent issues like this for an embarrassingly long time

Re: [galaxy-dev] Possible Galaxy memory leak?

2012-03-06 Thread Todd Oakley
We've experience memory-leak symptoms and we also use the PBS job runner here. We did not try to locate the leak, but instead installed monit as a work-around http://mmonit.com/monit/ Todd Oakley On 3/6/2012 11:10 AM, Nate Coraor wrote: There is also a memory leak that occurs when using the

Re: [galaxy-dev] Possible Galaxy memory leak?

2012-02-29 Thread John Chilton
We had intermittent issues like this for an embarrassingly long time at MSI, but since we applied this patch https://bitbucket.org/galaxy/galaxy-central/pull-request/36/fix-for-dynamic_optionspy Galaxy has been running smoothly for weeks. Seems unlikely this is the problem in your case (unless you