Re: [galaxy-dev] Tool Config Syntax Wiki page, actions tag
Hi Peter, Sorry for the delay in response. The outputs data actions tagset will allow you to set metadata, including e.g. column assignments (start,end,strand,etc) for tabular (interval) files. A somewhat complicated example of this is the cut tool (tools/filters/cutWrapper.xml), which sets output format to be interval (if required columns have been retained) and also sets the assigned columns to their new locations. Please let us know if this is not the information that you were interested it. Thanks for using Galaxy, Dan On Aug 9, 2011, at 5:58 AM, Peter Cock wrote: On Fri, Aug 5, 2011 at 4:19 PM, Jennifer Jackson j...@bx.psu.edu wrote: Thanks Peter, The wiki has been corrected, please let us know if you find anything else in the current wiki. This was likely from the migration. The next updated version of the public wiki is coming soon! Best, Jen Thanks Jen, I was hoping actions or something like that would allow a tool to set column meta data on tabular output files. Is this possible? Regards, Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Tool Config Syntax Wiki page, actions tag
On Fri, Aug 5, 2011 at 4:19 PM, Jennifer Jackson j...@bx.psu.edu wrote: Thanks Peter, The wiki has been corrected, please let us know if you find anything else in the current wiki. This was likely from the migration. The next updated version of the public wiki is coming soon! Best, Jen Thanks Jen, I was hoping actions or something like that would allow a tool to set column meta data on tabular output files. Is this possible? Regards, Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Tool Config Syntax Wiki page, actions tag
Thanks Peter, The wiki has been corrected, please let us know if you find anything else in the current wiki. This was likely from the migration. The next updated version of the public wiki is coming soon! Best, Jen Galaxy team On 8/4/11 8:30 AM, Peter Cock wrote: Hi, There seems to be something wrong with theactions tag on the wiki page: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax If doesn't appear in the table of contents, and there are three curly brackets after the section name: actions}}} Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
