Re: [galaxy-dev] problems with 'Profile Annotations' tool UI
Hi Dan
Thank you very much. The display works nicely, now.
Thanks, Hans
On 07/07/2011 06:14 PM, Daniel Blankenberg wrote:
Hi Hans,
Very sorry for the delay in response. The sample file that was included was
incorrect, but has been updated in changeset 5775:4220f8a5c571 and should now
display an interface.
If you would like to use or run the tool, you may find
$GALAXY_ROOT/scripts/tools/annotation_profiler/README.txt helpful. Please let
us know if you encounter further difficulties.
Thanks for using Galaxy,
Dan
On Jun 8, 2011, at 8:10 AM, Hans-Rudolf Hotz wrote:
Hi
we are looking into different methods to display dynamic contents in the tool
user interface.
To start, we looked at the 'Operate on Genomic Intervals:Profile Annotations' tool. We
turned it on in a local installation (May 20, 8c11dd28a3cf release), but we
struggled to get the interface to work.
On 'http://main.g2.bx.psu.edu/', the tables to choose from are only displayed if there is
a history item with: format: bed, database: hg18.
But in our local test installation, we don't get the list of tables, no matter whether we have a
('hg18') bed file in our history or not. It looks like as if the
'from_file=annotation_profiler_options.xml' statement in the
annotation_profiler.xml is ignored.
I know, the file 'annotation_profiler_options.xml' is read, since I get an
error during restart, if I provide invalid xml.
Is there anything else, I have to enable, in order to get this interface to
work? Currently, I don't care about the tools functionality, I just want the
(cool) interface to work.
Thank you very much for your help.
Regards, Hans
PS: this question is connected to Tim's question yesterday - I just
should have sent mine first - sorry.
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Re: [galaxy-dev] problems with 'Profile Annotations' tool UI
Hi Hans,
Very sorry for the delay in response. The sample file that was included was
incorrect, but has been updated in changeset 5775:4220f8a5c571 and should now
display an interface.
If you would like to use or run the tool, you may find
$GALAXY_ROOT/scripts/tools/annotation_profiler/README.txt helpful. Please let
us know if you encounter further difficulties.
Thanks for using Galaxy,
Dan
On Jun 8, 2011, at 8:10 AM, Hans-Rudolf Hotz wrote:
Hi
we are looking into different methods to display dynamic contents in the tool
user interface.
To start, we looked at the 'Operate on Genomic Intervals:Profile Annotations'
tool. We turned it on in a local installation (May 20, 8c11dd28a3cf
release), but we struggled to get the interface to work.
On 'http://main.g2.bx.psu.edu/', the tables to choose from are only displayed
if there is a history item with: format: bed, database: hg18.
But in our local test installation, we don't get the list of tables, no
matter whether we have a ('hg18') bed file in our history or not. It looks
like as if the 'from_file=annotation_profiler_options.xml' statement in the
annotation_profiler.xml is ignored.
I know, the file 'annotation_profiler_options.xml' is read, since I get an
error during restart, if I provide invalid xml.
Is there anything else, I have to enable, in order to get this interface to
work? Currently, I don't care about the tools functionality, I just want the
(cool) interface to work.
Thank you very much for your help.
Regards, Hans
PS: this question is connected to Tim's question yesterday - I just
should have sent mine first - sorry.
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
