Re: [galaxy-dev] Best location for galaxy environmental variables

2011-07-21 Thread Shantanu Pavgi
We are using environment modules ( http://modules.sourceforge.net/ ) on the cluster and took same approach for the galaxy install. The module files are loaded using .bashrc file of galaxy user. It's also useful for non-galaxy users/admins for running galaxy-tools from command-line by simply loa

[galaxy-dev] Best location for galaxy environmental variables

2011-07-20 Thread michael burrell (TSL)
Good afternoon, More of a general discussion point, where is the best place to put the environmental variable declarations within galaxy. To date I have been placing them as exports in the run.sh, though I can not help but wonder if there is a better place, which is appropriate whatever method