Re: [galaxy-dev] Can not find hg_g1k_v37.fa.

2013-10-16 Thread Jennifer Jackson
Update: We are hosting .2bit files as a standard on the rsync server, so this is how to retrieve sequence data. No .fa files will be served. The advantages are that the files are 25% smaller, the rsyncs are quicker, and local/cloud users can easily convert to fasta format anytime. I will be

Re: [galaxy-dev] Can not find hg_g1k_v37.fa.

2013-10-16 Thread Jennifer Jackson
Hello Shenwiyn, We can confirm that the hg_g1k_v37.fa is currently unavailable. We are working to correct this. Meanwhile, the hg_g1k_v37.2bit files is available. This can be convert to fasta using the tool "twoBitToFa" available from UCSC in the downloads area, under source code, pre-compil

[galaxy-dev] Can not find hg_g1k_v37.fa.

2013-09-04 Thread shenwiyn
Hi everyone, I want to use the hg_g1k_v37.fa on my local Galaxy,but I can not find this data.When I use the command : rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/hg_g1k_v37/seq/hg_g1k_v37.fa the error occurred: receiving incremental file list rsync: link_stat "/hg_g1k_v37/seq/hg_g1k_v37