Re: [galaxy-dev] Could anyone body tell me why our C program do not work in galaxy
2011/4/25 liyanhui607 liyanhui...@163.com: Thank you very much! After I have added it to the path, it can work now. Best Wishes! Yan-Hui Li Oh good. Peter P.S. Please keep the mailing list on replies. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Could anyone body tell me why our C program do not work in galaxy
Dear Sir, We have a program writen in C lanuage. It can run nomally in linux environment. We plan to add it to galaxy, but it did not work. The C file after complie named shortest-path The shortest-path.xml is as follow: Could anybody tell me what is wrong ? why it does not work? Thank you very much! Best Wishes! Yan-Hui Li tool id=shortest_path_1 name=shortest_path command interpreter=C./shortest_path $infile1 $output /command inputs param format=text name=infile1 type=data label= expressed_genes_20101024.hprd8_biogrid-2.0.58.adj_matrix.txt / /inputs outputs data format=tabular name=output / /outputs tests test param name=input value=1/ param name=input value=../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt/ param name=input value=../ppi/hprd8_biogrid-2.0.58.ppi.txt/ output name=out_file1 file=expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt/ /test /tests /tool ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Could anyone body tell me why our C program do not work in galaxy
Without seeing an error message I'll guess that issue is that there is no C interpreter. Your program is a compiled executable. Try the following and let me know (including any error messages) if it doesn't work: command shortest_path $infile1 $output /command -Dannon On Apr 22, 2011, at 2:12 AM, liyanhui607 wrote: Dear Sir, We have a program writen in C lanuage. It can run nomally in linux environment. We plan to add it to galaxy, but it did not work. The C file after complie named shortest-path The shortest-path.xml is as follow: Could anybody tell me what is wrong ? why it does not work? Thank you very much! Best Wishes! Yan-Hui Li tool id=shortest_path_1 name=shortest_path command interpreter=C./shortest_path $infile1 $output /command inputs param format=text name=infile1 type=data label= expressed_genes_20101024.hprd8_biogrid-2.0.58.adj_matrix.txt / /inputs outputs data format=tabular name=output / /outputs tests test param name=input value=1/ param name=input value=../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt/ param name=input value=../ppi/hprd8_biogrid-2.0.58.ppi.txt/ output name=out_file1 file=expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt/ /test /tests /tool 体验网易邮箱2G超大附件，轻松发优质大电影、大照片，提速3倍! ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Could anyone body tell me why our C program do not work in galaxy
2011/4/22 liyanhui607 liyanhui...@163.com: Dear Sir, We have a program writen in C lanuage. It can run nomally in linux environment. We plan to add it to galaxy, but it did not work. The C file after complie named shortest-path The shortest-path.xml is as follow: Could anybody tell me what is wrong ? why it does not work? Thank you very much! Best Wishes! Yan-Hui Li What error message do you get? Did you try the two changes I suggested (the same things Dan just suggested as well): https://bitbucket.org/galaxy/galaxy-central/issue/525 Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
