[galaxy-dev] FASTQ converter not working

2013-10-10 Thread James Tarver
So I have used Galaxy to convert 50 different FASTQ files into FASTA with no problems before over the past year. The sequencer and FASTQ file format have been identical, however, yesterday when I tired to use the the FASTQ to FASTA converter I couldn't get it to recognise my files. The drop

Re: [galaxy-dev] FASTQ converter not working

2013-10-10 Thread Daniel Blankenberg
Hi James, The FASTX fastq to fasta conversion tool requires your input to be in one of the fastqsanger,fastqsolexa,fastqillumina datatypes. Please note that this does not include the base fastq datatype. Can you double check the datatype assigned to your datasets? Alternatively, there is also