Hi Team,
I am sorry to be a pest, but I am under-the-gun to get this resolved. I have
followed the instructions for installing GATK2 on my cloud VM. After doing
that I discovered that the version of java running on the VM was v1.6.x and
GATK2 required v1.7.0x. I removed version 6 and
First guess is that perhaps the system is still defaulting to using java 1.6
and not 1.7. What happens if you run “java -version” as the Galaxy system user?
Perhaps try a reboot of the vm as well to make sure that the Galaxy app is
running with java 1.7.
Also, is this a custom vm? If it using
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Subject: Re: [galaxy-dev] GATK2 java version related issues
First guess is that perhaps the system is still defaulting to using java 1.6
and not 1.7. What happens if you run “java -version” as the Galaxy system user?
Perhaps try
