Hi all,
I want to use the encode tools as random intervals in my local instance
of galaxy cistrome.
I have the xml file and the py file which can run the tool, but it required
any local data.
These data are referenced in tool-data/regions.loc but I've not found where
can I procure the bed which
Hi,
I am sorry for the trivial question. Does anyone know how I can make a local
instance of Galaxy use our local database files? We have downloaded the
database from USCS and would like to use the downloaded files instead of
retrieving it from the UCSC Table Browser when processing data.
Two ideas:
(1) Use data libraries to import all UCSC data files, making sure to link data
rather than copy into Galaxy:
http://wiki.galaxyproject.org/Admin/Data%20Libraries/Uploading%20Library%20Files
(2) Set up a local table browser and modify the ucsc_tablebrowser.xml to point
to your local
