Re: [galaxy-dev] Path to tool designation in tool config xml

2011-09-07 Thread Timothy Wu
Thanks, this helps. I was running with an interpreter and I didn't realize I had to had the full path in there. I was expecting that $PATH which contains the directory the script was located in to take care of it. Thanks you very much for the clarification. Timothy

Re: [galaxy-dev] Path to tool designation in tool config xml

2011-09-07 Thread Nate Coraor
Timothy Wu wrote: Thanks, this helps. I was running with an interpreter and I didn't realize I had to had the full path in there. I was expecting that $PATH which contains the directory the script was located in to take care of it. Thanks you very much for the clarification. If the script is

[galaxy-dev] Path to tool designation in tool config xml

2011-09-06 Thread Timothy Wu
Hi, I'm trying the add tool tutorial at http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial . It works, but how do I designate the path of the tool if it's not dropped into the same directory as the tool config xml? Some executable may not be in the directory. Surely it couldn't

Re: [galaxy-dev] Path to tool designation in tool config xml

2011-09-06 Thread Peter Cock
On Tue, Sep 6, 2011 at 9:41 AM, Timothy Wu 2hug...@gmail.com wrote: Hi, I'm trying the add tool tutorial at http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial . It works, but how do I designate the path of the tool if it's not dropped into the same directory as the tool config xml?

Re: [galaxy-dev] Path to tool designation in tool config xml

2011-09-06 Thread Nate Coraor
Timothy Wu wrote: Hi, I'm trying the add tool tutorial at http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial . It works, but how do I designate the path of the tool if it's not dropped into the same directory as the tool config xml? Some executable may not be in the directory.