Re: [galaxy-dev] Question about from_work_dir

2011-11-29 Thread Jeremy Goecks
Aurelien, The particular behavior that you need isn't currently supported because the value of from_work_dir isn't treated as a template. To work around this limitation, you can do the move/copy operations in your tool wrapper; see the wrappers for Bowtie and Sicer for examples on how to

[galaxy-dev] Question about from_work_dir

2011-11-28 Thread Aurélien Bernard
Hi everybody, I'm currently trying to create a wrapper for one of my program. This program generates several output file and the name of each output file is derived from the name of the main input file. _In the .xml file I try to get my output files with the following tag_: outputs data

Re: [galaxy-dev] Question about from_work_dir

2011-11-28 Thread Jeremy Goecks
Aurelien, The particular behavior that you need isn't currently supported because the value of from_work_dir isn't treated as a template. To work around this limitation, you can do the move/copy operations in your tool wrapper; see the wrappers for Bowtie and Sicer for examples on how to do