Re: [galaxy-dev] Stable Galaxy for local install
,/software/009088d5e76f/galaxy-dist/database/job_working_directory/000/280/metadata_out_HistoryDatasetAssociation_740_kJiXq5,/software/009088d5e76f/galaxy-dist/database/job_working_directory/000/280/metadata_results_HistoryDatasetAssociation_740_M58ii4,,/software/009088d5e76f/galaxy-dist/database/job_working_directory/000/280/metadata_override_HistoryDatasetAssociation_740_p2WIO0 weiyan5828 0.0 0.0 10480 924 pts/2R+ 11:36 0:00 ps aux weiyan5829 0.0 0.0 6056 756 pts/2S+ 11:36 0:00 grep --color weiyan I see nothing in /software/009088d5e76f/galaxy-dist/database/job_working_directory/000/: $ ll /software/009088d5e76f/galaxy-dist/database/job_working_directory/000/ total 0 * Actually,I can got the correct results in Galaxy main by running the above steps. I don't know what is wrong with my local Gaalxy.Thank you. cngbgalaxy *From:* Adam Brenner mailto:aebre...@uci.edu *Date:* 2013-09-12 10:47 *To:* cngbgal...@gmail.com mailto:cngbgal...@gmail.com *CC:* joachim.jacob mailto:joachim.ja...@vib.be; galaxy-dev@lists.bx.psu.edu mailto:galaxy-dev@lists.bx.psu.edu; galaxy-dev mailto:galaxy-...@bx.psu.edu *Subject:* Re: [galaxy-dev] Stable Galaxy for local install What I want to do in a hurry is to fix the problem of Select in Filter and Sort .It is a step very important for me to Sort SAM file for Cufflinks.Thank you very much for all of your help. Per my last email:. $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable If you are running into issues, can you be more specific...provide error message? Steps on how to reproduce your issue? -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 6:58 PM, cngbgal...@gmail.com cngbgal...@gmail.com wrote: Hi all, What I want to do in a hurry is to fix the problem of Select in Filter and Sort .It is a step very important for me to Sort SAM file for Cufflinks.Thank you very much for all of your help. cngbgalaxy From: Adam Brenner Date: 2013-09-12 00:41 To: cngbgalaxy CC: joachim.jacob; galaxy-dev@lists.bx.psu.edu; galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] Stable Galaxy for local install Galaxy development occurs in two repositories, galaxy-central and galaxy-dist. Changes are stabilized in galaxy-central and then pushed to galaxy-dist roughly once a month.[1] So $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable [1]: http://wiki.galaxyproject.org/Admin/Get%20Galaxy -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 8:42 AM, cngbgalaxy cngbgal...@gmail.com wrote: Hi Joachim, Thank you very much for your help. Actually I find some problems about such versions of Galaxy in https://bitbucket.org/galaxy/galaxy-dist/downloads . We can not view the data in history by clicking the eyes icon on the c42567f43aa7 version.The Select in Filter and Sort fail to work on the 1ae95b3aa98d (release_2013.08.12 ) version and the 524f246ca853 (release_2013.06.03 ),though I don't know whether it is a bug or not. As a result,I feel confused about which version of Galaxy to install and avoid the above problems. cngbgalaxy From: Joachim Jacob | VIB | Date: 2013-09-11 22:38 To: test galaxy CC: galaxy-dev; galaxy-dev Subject: Re: [galaxy-dev] Stable Galaxy for local install The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http
Re: [galaxy-dev] Stable Galaxy for local install
The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Stable Galaxy for local install
Hi Joachim, Thank you very much for your help. Actually I find some problems about such versions of Galaxy in https://bitbucket.org/galaxy/galaxy-dist/downloads . We can not view the data in history by clicking the eyes icon on the c42567f43aa7 version.The Select in Filter and Sort fail to work on the 1ae95b3aa98d (release_2013.08.12 ) version and the 524f246ca853 (release_2013.06.03 ),though I don't know whether it is a bug or not. As a result,I feel confused about which version of Galaxy to install and avoid the above problems. cngbgalaxy From: Joachim Jacob | VIB | Date: 2013-09-11 22:38 To: test galaxy CC: galaxy-dev; galaxy-dev Subject: Re: [galaxy-dev] Stable Galaxy for local install The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Stable Galaxy for local install
Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Stable Galaxy for local install
Galaxy development occurs in two repositories, galaxy-central and galaxy-dist. Changes are stabilized in galaxy-central and then pushed to galaxy-dist roughly once a month.[1] So $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable [1]: http://wiki.galaxyproject.org/Admin/Get%20Galaxy -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 8:42 AM, cngbgalaxy cngbgal...@gmail.com wrote: Hi Joachim, Thank you very much for your help. Actually I find some problems about such versions of Galaxy in https://bitbucket.org/galaxy/galaxy-dist/downloads . We can not view the data in history by clicking the eyes icon on the c42567f43aa7 version.The Select in Filter and Sort fail to work on the 1ae95b3aa98d (release_2013.08.12 ) version and the 524f246ca853 (release_2013.06.03 ),though I don't know whether it is a bug or not. As a result,I feel confused about which version of Galaxy to install and avoid the above problems. cngbgalaxy From: Joachim Jacob | VIB | Date: 2013-09-11 22:38 To: test galaxy CC: galaxy-dev; galaxy-dev Subject: Re: [galaxy-dev] Stable Galaxy for local install The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Stable Galaxy for local install
What I want to do in a hurry is to fix the problem of Select in Filter and Sort .It is a step very important for me to Sort SAM file for Cufflinks.Thank you very much for all of your help. Per my last email:. $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable If you are running into issues, can you be more specific...provide error message? Steps on how to reproduce your issue? -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 6:58 PM, cngbgal...@gmail.com cngbgal...@gmail.com wrote: Hi all, What I want to do in a hurry is to fix the problem of Select in Filter and Sort .It is a step very important for me to Sort SAM file for Cufflinks.Thank you very much for all of your help. cngbgalaxy From: Adam Brenner Date: 2013-09-12 00:41 To: cngbgalaxy CC: joachim.jacob; galaxy-dev@lists.bx.psu.edu; galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] Stable Galaxy for local install Galaxy development occurs in two repositories, galaxy-central and galaxy-dist. Changes are stabilized in galaxy-central and then pushed to galaxy-dist roughly once a month.[1] So $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable [1]: http://wiki.galaxyproject.org/Admin/Get%20Galaxy -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 8:42 AM, cngbgalaxy cngbgal...@gmail.com wrote: Hi Joachim, Thank you very much for your help. Actually I find some problems about such versions of Galaxy in https://bitbucket.org/galaxy/galaxy-dist/downloads . We can not view the data in history by clicking the eyes icon on the c42567f43aa7 version.The Select in Filter and Sort fail to work on the 1ae95b3aa98d (release_2013.08.12 ) version and the 524f246ca853 (release_2013.06.03 ),though I don't know whether it is a bug or not. As a result,I feel confused about which version of Galaxy to install and avoid the above problems. cngbgalaxy From: Joachim Jacob | VIB | Date: 2013-09-11 22:38 To: test galaxy CC: galaxy-dev; galaxy-dev Subject: Re: [galaxy-dev] Stable Galaxy for local install The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Stable Galaxy for local install
Hi all, What I want to do in a hurry is to fix the problem of Select in Filter and Sort .It is a step very important for me to Sort SAM file for Cufflinks.Thank you very much for all of your help. cngbgalaxy From: Adam Brenner Date: 2013-09-12 00:41 To: cngbgalaxy CC: joachim.jacob; galaxy-dev@lists.bx.psu.edu; galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] Stable Galaxy for local install Galaxy development occurs in two repositories, galaxy-central and galaxy-dist. Changes are stabilized in galaxy-central and then pushed to galaxy-dist roughly once a month.[1] So $ hg clone https://bitbucket.org/galaxy/galaxy-dist/ $ cd galaxy-dist $ hg update stable [1]: http://wiki.galaxyproject.org/Admin/Get%20Galaxy -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Wed, Sep 11, 2013 at 8:42 AM, cngbgalaxy cngbgal...@gmail.com wrote: Hi Joachim, Thank you very much for your help. Actually I find some problems about such versions of Galaxy in https://bitbucket.org/galaxy/galaxy-dist/downloads . We can not view the data in history by clicking the eyes icon on the c42567f43aa7 version.The Select in Filter and Sort fail to work on the 1ae95b3aa98d (release_2013.08.12 ) version and the 524f246ca853 (release_2013.06.03 ),though I don't know whether it is a bug or not. As a result,I feel confused about which version of Galaxy to install and avoid the above problems. cngbgalaxy From: Joachim Jacob | VIB | Date: 2013-09-11 22:38 To: test galaxy CC: galaxy-dev; galaxy-dev Subject: Re: [galaxy-dev] Stable Galaxy for local install The latest code from the 'stable' branch of Galaxy is preferred. See the news brief accompanying the update (release_2013.08.12) on http://wiki.galaxyproject.org/DevNewsBriefs/2013_08_12 You need mercurial (http://mercurial.selenic.com/) for installing Galaxy. Report bugs at https://trello.com/b/75c1kASa/galaxy-development Cheers Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/11/2013 03:55 AM, test galaxy wrote: Hi everyone, I want to install my local Galaxy with less bugs,and I don't know which version is more stable and work well.Could anyone give same advise?Thank you very much. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
