I will modify the gff file as you mentioned and update galaxy.
Thanks a lot.
Yec'han
Yec'han LAIZET
Ingenieur
Plateforme Genome Transcriptome
Tel: 05 57 12 27 75
_
INRA-UMR BIOGECO 1202
Equipe Genetique
69 route
> Whatever the file type I set for the gff file (gff3, gff or gtf), I get the
> transcript_id error:
>
> Traceback (most recent call last):
> File
> "/home/pgtgal/galaxy-dist/lib/galaxy/datatypes/converters/interval_to_fli.py",
> line 91, in
>main()
> File
> "/home/pgtgal/galaxy-dist/lib
Here are the links to get the gff and the related genome files:
http://genomeportal.jgi-psf.org/Crypa2/download/Cparasiticav2.GeneCatalog20091217.gff.gz
http://genomeportal.jgi-psf.org/Crypa2/download/Cryphonectria_parasiticav2.nuclearAssembly.unmasked.gz
Whatever the file type I set for the gf
Yes, you should be able to use a single GFF for the complete genome.
This error stems from the same issue as before, namely that Galaxy is treating
your GFF file as GTF.
If you think your GFF is well formatted and there is an issue with Galaxy's
handling of GFF, please send me your GFF and I'l
Hello,
Is it possible to load a unique gff file with the annotations of several
chromosomes for my custom build in one step (one gff file)?
With the current version of galaxy, it seems that I can load a gff file
referring only to one chromosome. That's pretty tedious to load 43 gff
files sep
