Re: [galaxy-dev] Trouble viewing interval files in UCSC with Apache+XSendFile

2011-04-07 Thread Nate Coraor
Michael Pheasant wrote: > Do you mean as the same user the galaxy python daemons run as? > But not as the same user who has write permissions to those python scripts, > right? To be more specific, it's done by group, and that group only has read-access, yes. --nate > > > Mike. > > > > On Th

Re: [galaxy-dev] Trouble viewing interval files in UCSC with Apache+XSendFile

2011-04-06 Thread Michael Pheasant
Do you mean as the same user the galaxy python daemons run as? But not as the same user who has write permissions to those python scripts, right? Mike. On Thu, Apr 7, 2011 at 5:43 AM, Nate Coraor wrote: > Assaf Gordon wrote: > > Until a better solution comes along, this tiny patch makes the

Re: [galaxy-dev] Trouble viewing interval files in UCSC with Apache+XSendFile

2011-04-06 Thread Nate Coraor
Assaf Gordon wrote: > Until a better solution comes along, this tiny patch makes the temp files > world-readable: > > http://cancan.cshl.edu/labmembers/gordon/files/apache_xsendfile_temp_files.patch We avoid this by running our webserver as the Galaxy user. Obviously not a solution for everyone

Re: [galaxy-dev] Trouble viewing interval files in UCSC with Apache+XSendFile

2011-04-06 Thread Assaf Gordon
Until a better solution comes along, this tiny patch makes the temp files world-readable: http://cancan.cshl.edu/labmembers/gordon/files/apache_xsendfile_temp_files.patch Assaf Gordon wrote, On 04/05/2011 11:14 AM: > Hello, > > I've encountered a strange combination of factors that results in f

[galaxy-dev] Trouble viewing interval files in UCSC with Apache+XSendFile

2011-04-05 Thread Assaf Gordon
Hello, I've encountered a strange combination of factors that results in file access problems. Perhaps I'm doing something wrong - any advice will be appreciated. I'm using Apache + XSendFile. when viewing a strict BED file, everything works, because the actual dataset filename is passed on to