Re: [galaxy-dev] UCSC Display option

2014-02-27 Thread Hans-Rudolf Hotz
Hi Alper Have a look at ~/galaxy_dist/tool-data/shared/ucsc/ucsc_build_sites.txt check the line starting with main http://genome.ucsc.edu/cgi-bin/hgTracks?; and add mm10 do a restart and you should get the link to 'UCSC main' for data mapped to mm10 if that fixes the problem for

[galaxy-dev] UCSC Display option

2014-02-26 Thread Alper Kucukural
Hi, When I map the reads with bowtie2 to hg19. I got the output like below and there are four display options. When I map the reads to mm10. I got only display in “IGB Local Web option. So, how can I fix this for mm10 or others and show all options? 101: Bowtie2 on data 4: aligned reads 91.6