Thanks for reporting this issue and workaround Ulf. I've committed a fix that
addresses this issue by only includeing the -split option for BED/GFF/GTF
datasets and not VCF:
https://bitbucket.org/galaxy/galaxy-central/commits/b8d8f81bed872e58b4691643de8a08fa41662e71
Best,
J.
On Sep 12, 2013,
Dear Jeremy
Thank you for your reply and sorry for not being clear. In short I
solved the problem. Below is some info, in case this is useful for
someone else.
Thanks for your help
The situation was:
On Main:
Visualisation of the SAM/BAM file - OK
Visualisation of the VCF file - OK
On my
Dear all
My attempts to visualise a vcf file in trackster fail. I can visualise
the corresponding SAM/BAM files fine. I can visualise the same file on
Galaxy main too, but not in my local install.
I receive the following error message:
Trackster Error
Input error: found interval with
My attempts to visualise a vcf file in trackster fail. I can visualise
the corresponding SAM/BAM files fine. I can visualise the same file on
Galaxy main too, but not in my local install.
To be clear, you can visualize the VCF dataaset on main but not locally? Can
you visualize SAM/BAM
