To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I tracked it down to a problem with the API proxy configuration.
I had the API calls diverted to a different server since I wanted to ensure
that API
: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:47 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being able
to display BED files
, August 23, 2013 11:02 AM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
Thanks Jeremy,
I did what you suggested and now it no longer complains!
Not sure if I had edited datatypes_conf.xml
-boun...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:12 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I now have a different problem with a different
...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:47 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I tracked it down to a problem with the API proxy configuration
Hi Thon
double check your datatypes_conf.xml (which was not touched/changed
during the update process, since it is listed in the .hgignore file, I
guess) with the new datatypes_conf.xml.sample file for any changes
regarding converters for bed files
Regards, Hans-Rudolf
On 08/22/2013
Hi,I am using the latest version of galaxy at my local installation and I try to use trackster to display a simple BED file, but it invariably complains about not having a converter for this datatype and it tells me to check mydatatypes_conf.xml which I did (not sure what I should be looking for,
Hi Anthonius,
Do you have the BEDTools installed and its directory added to your PATH
environment variable? Trackster uses compressed file formats to reduce the
amount of data transfers.
I hope this helps,
Sam
On Wed, Aug 21, 2013 at 4:11 PM, Anthonius deBoer thondeb...@me.com wrote:
Hi,
Yep...$ bedtools --versionbedtools v2.17.0ThonOn Aug 21, 2013, at 01:40 PM, sam guerler aysam.guer...@gmail.com wrote:Hi Anthonius,Do you have the BEDTools installed and its directory added to your PATH environment variable? Trackster uses compressed file formats to reduce the amount of data