Hi there,
I have a local copy of galaxy and I am trying to install bowtie2 2.1.0 onto
the system via the toolshed. However it just doesn't work. I always get a
Server Error message. I have checked if the dependencies are installed and
they are all installed in the toolshed depenencies folders.
Hi Alex,
there is a difference in
http://toolshed.g2.bx.psu.edu/view/devteam/package_bowtie2_2_1_0 and
http://toolshed.g2.bx.psu.edu/view/devteam/bowtie_wrappers
The package_* is installing the binary for you and can be used by other
programs as well. bowtie_wrappers contains the actual wrappers
Thanks for your quick answers.
I actually have installed the dependencies first and then I have tried to
add bowtie2 http://toolshed.g2.bx.psu.edu/view/devteam/bowtie2.
But this is where the problem lies: I get following error message:
Server Error An error occurred. See the error logs for more
Alex,
To help determine the cause of this, could you paste the output of the
following commands run from the root of your Galaxy installation?
hg heads
hg id
--Dave B.
On 01/31/2014 09:05 AM, Alexander Kurze wrote:
Thanks for your quick answers.
I actually have installed the
Here we go
changeset: 8796:961ae35ba612
branch: stable
tag: tip
parent: 8794:1c7174911392
user:Nate Coraor n...@bx.psu.edu
date:Fri Feb 08 11:23:04 2013 -0500
summary: Added tag release_2013.02.08 for changeset 1c7174911392
changeset: 8795:9fd7fe0c5712
Alex,
It is likely that the error you're encountering may have been resolved
in the current stable branch. A description of the steps required to
update your installation can be found on the following page:
https://wiki.galaxyproject.org/Admin/GetGalaxy#Keep_your_code_up_to_date
Be advised
