[galaxy-dev] cufflinks and global_model.txt

2012-09-25 Thread wormbuff
I recently installed Galaxy on Ubuntu 12.04.1 LTS. Bowtie, SAMtools, and Tophat all run fine with my small subset of paired-end Illumina reads. Unfortunately, it seems to only partially work when I run Cufflinks v2.0.2. Three entires in my history appear (gene expression, transcript

[galaxy-dev] cufflinks and global_model.txt

2012-09-25 Thread wormbuff
I recently installed Galaxy on Ubuntu 12.04.1 LTS. Bowtie, SAMtools, and Tophat all run fine with my small subset of paired-end Illumina reads. Unfortunately, it seems to only partially work when I run Cufflinks v2.0.2. Three entires in my history appear (gene expression, transcript

Re: [galaxy-dev] cufflinks and global_model.txt

2012-09-25 Thread Jeremy Goecks
The Cufflinks wrapper doesn't support v2.0 or greater yet. Please use v1.3.0 for now. We expect to update the Cufflinks wrapper to support v2.0+ in the next couple weeks. Best, J. On Sep 25, 2012, at 5:34 PM, wormbuff wrote: I recently installed Galaxy on Ubuntu 12.04.1 LTS. Bowtie,