Hello David,
An update is planned, but we can't provide an exact time-line yet. To
track the issue, this bitbucket ticket can be followed:
https://bitbucket.org/galaxy/galaxy-central/issue/524/
Apologies for the delay in reply,
Best,
Jen
Galaxy team
On 8/23/11 9:10 AM, David Hoover wrote:
I have an mpileup tool for Galaxy I've developed. After a little more testing
I may be able to share it.
the tool also converts the bcl output of mpileup to vcf
On Oct 12, 2011, at 2:41 PM, Jennifer Jackson wrote:
Hello David,
An update is planned, but we can't provide an exact time-line
Is there any good reason why Galaxy can't use a more recent version of
samtools? The only difference I can see is the mpileup command. The algorithm
by which mpileup finds SNPs is a little different. Does anyone know if the
file format has changed? The only files that need to change are
