Re: [galaxy-dev] universe_wsgi.ini question for Cistrome

2014-02-28 Thread Ido Tamir
I have CEAS as a tool. I wrapped the standalone CEAS version. I tried adding a binary datatype for the annotation db but even with the binary datatype upload somehow did not work (IIRC galaxy tried to convert it to ascii). I then put the database as a selectable parameter in a dropdown list, beca

[galaxy-dev] universe_wsgi.ini question for Cistrome

2014-02-26 Thread ruiwang.sz
Hi Guys, Are there anyone who is using Cistrome? I tried to merge Cistrome's setting into our own galaxy instance. A new entry is # Path to the static library files for assembly, ceaslib, chromLen, conservation, liftOver and MAT-lib # Then in other tool configuration xml file, we can use 'from g

Re: [galaxy-dev] universe_wsgi.ini

2012-02-27 Thread Louise-Amélie Schmitt
23 AM *To:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] universe_wsgi.ini Hello Daniel, I had similar issues when setting up our own. The POST size limit is not set by Galaxy. If I remember correctly it's in your Apache config, though I don't remember exactly where i

Re: [galaxy-dev] universe_wsgi.ini

2012-02-24 Thread Brami, Daniel
galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Louise-Amélie Schmitt Sent: Friday, February 24, 2012 12:23 AM To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] universe_wsgi.ini Hello Daniel, I had similar issues when setting up our own. The POST size limit is not set by Galaxy. If I remember co

Re: [galaxy-dev] universe_wsgi.ini

2012-02-24 Thread Louise-Amélie Schmitt
Hello Daniel, I had similar issues when setting up our own. The POST size limit is not set by Galaxy. If I remember correctly it's in your Apache config, though I don't remember exactly where it was. For the .loc files, here is an example: dm3-btdm3D.melanogaster 3 /path/to/index

[galaxy-dev] universe_wsgi.ini

2012-02-23 Thread Brami, Daniel
I have been struggling with setting up my local Galaxy instance for the past two days. Can anyone post a copy of their universe_wsgi.ini file , with the sensitive info commented / removed? I need an instance that can handle local files greater than 2 GB (ie: does not go through POST method of