I'm only guessing here, but maybe the issue is that the parameter names
are all the same (namely model). Did you try with only unique names?
Especially this one:
param name=models type=select label=model source
help=History or installed models? value=local
should get it's own name.
Sarah
On 02/06/2012 03:38 PM, Holger Klein wrote:
Dear all,
I'm working on a tool wrapper which for a sequence scoring tool.
It's supposed to score sequences either using a library installed to
galaxy (tool-data/models.loc) or datasets from the user history.
I tried to implement this behavior using theconditional /when
value mechanism, simplified code follows below.
Using locally installed models (from models.loc) fails with NotFound:
cannot find 'models', although in the details view of the failed tool
run model database points to the right file.
Using the model file from the history works.
Defining _only_ locally installed models from models.loc also works
(removing theconditional stuff and leaving only the part insidewhen
value='local' /when).
The commandline might look a bit strange but is correct.
Can anybody spot what is going wrong here?
Regards,
Holger
--
command
calcModels --scoreFasta -- --fa $fasta_in --bgFa $fasta_background
--models $models $output_table
/command
inputs
param format=fasta name=fasta_in type=data label=Input Fasta
File /
param format=fasta name=fasta_background type=data
label=Background Fasta File /
conditional name=ModelSource
param name=models type=select label=model source
help=History or installed models? value=local
option value=localLocally installed models/option
option value=historyModels from your history/option
/param
when value=local
param name=models type=select label=model database
options from_file=models.loc
column name=name index=1/
column name=value index=2/
/options
/param
/when
when value=history
param name=models type=data format=tabular label=model
database /
/when
/conditional
/inputs
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
