Perfect. Thanks!
On Fri, Jun 26, 2015 at 6:02 PM, Martin Čech mar...@bx.psu.edu wrote:
The second link leads to an endpoint that does exactly that.
M.
On Fri, Jun 26, 2015 at 4:43 PM Ryan G ngsbioinformat...@gmail.com
wrote:
What if the data is not in the history? Ie we received ngs
Hi all,
My galaxy is the last update and I work with samtools 1.2.
I have a bug with the sorting and the upload of bam file.
This bug appears only when I try to upload bam sorted by name or when
I try to sort by name.
When I work with bam sorted by coordinate, there is no problem.
So, when I try
Thanks Eric,
I’ve tried this this morning.
Seems to work like a charm !
Bye,
Erwan
Le 26 juin 2015 à 16:35, Eric Rasche e...@tamu.edu a écrit :
I have the same problem with CAS under REMOTE_USER, it's pretty annoying.
If you're just using LDAP authentication, you can switch over to
Thanks for the bug report. I have fixed this problem here
(https://github.com/galaxyproject/planemo/commit/a32d0820a6b856d8d15c9619c97549230a17)
and released a new version of planemo (0.13.0) with fix. Hopefully you
will get a better error message after the upgrade if there is still a
Thanks,
now I get the following directly after the diff output:
Could not update stacks
object of type 'NoneType' has no len()
/usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768:
InsecureRequestWarning: Unverified HTTPS request is being made. Adding
Ay shit. Just realized during looking at it the third time:
Someone forgot to uncomment the key line o_o'
2015-06-29 16:21 GMT-05:00 Alexander Vowinkel vowinkel.alexan...@gmail.com
:
Here they are:
~/.planemo.yml: http://pastebin.com/nWdT6ybx
Command-Log: http://pastebin.com/baBmrD8d
Here they are:
~/.planemo.yml: http://pastebin.com/nWdT6ybx
Command-Log: http://pastebin.com/baBmrD8d
2015-06-29 15:23 GMT-05:00 John Chilton jmchil...@gmail.com:
Do you have a ~/.planemo.yml file? I think probably yes based on the
previous exception. Can you replace passwords and keys with
Do you have a ~/.planemo.yml file? I think probably yes based on the
previous exception. Can you replace passwords and keys with and
send me a copy of that as well as the command-line that produced the
above output?
-John
On Mon, Jun 29, 2015 at 12:05 PM, Alexander Vowinkel
Dear All,
I have some problems with the download of genome files by the data
manager. I tried to download some genome files from the UCSC server with
the data manager of galaxy ( name: data_manager_fetch_genome_all_fasta,
revision: cca219f2b212), but it fails because of a timeout. Our galaxy
