Re: [galaxy-dev] Slow repsonses viewing histories

2015-07-24 Thread Christian Schudoma (TSL)
Yay, thank you so much Dannon! That was the jackpot! My user was also quite happy. Remind me to buy you a beer at the next GCC ;) Cheers Christian On 24/07/15 17:50, Dannon Baker wrote: Hey Christian, I used /scripts/db_shell.py and something like https://gist.github.com/dannon/e71b7aa9546fce

Re: [galaxy-dev] Slow repsonses viewing histories

2015-07-24 Thread Dannon Baker
Hey Christian, I used /scripts/db_shell.py and something like https://gist.github.com/dannon/e71b7aa9546fcecf6e9e to reset problematic BAM metadata. Basically, it selects all the large metadata and completely strips out the new overly large optional attributes, leaving required attributes alone.

Re: [galaxy-dev] Slow repsonses viewing histories

2015-07-24 Thread Christian Schudoma (TSL)
Hi Nate, all I would like to add my own version of the problem to this. I, or rather my (inherited) Galaxy instance (which should be running 15.05+, how do I find out?), have/s similar symptoms as Richard's did. In my case it only occurs to a single user and we are not able to execute the "Save

Re: [galaxy-dev] Switching history doesn't work with prefix

2015-07-24 Thread Dannon Baker
Great, glad it's working! On Fri, Jul 24, 2015 at 6:00 AM Peter Cock wrote: > Confirmed, updating to 15.05 fixed the switch history feature for us. > > http://galaxy.readthedocs.org/en/master/releases/15.05_announce.html > > Now running: > > $ hg branch > release_15.05 > $ hg log | head > change

Re: [galaxy-dev] Switching history doesn't work with prefix

2015-07-24 Thread Peter Cock
Confirmed, updating to 15.05 fixed the switch history feature for us. http://galaxy.readthedocs.org/en/master/releases/15.05_announce.html Now running: $ hg branch release_15.05 $ hg log | head changeset: 17125:e837a68e8d14 tag: tip parent: 17121:7a4e3a661a76 parent: 17124:46

Re: [galaxy-dev] Switching history doesn't work with prefix

2015-07-24 Thread Peter Cock
I think we were running 15.03.1, $ hg branch stable $ hg log | head changeset: 17050:6395e7035143 tag: tip parent: 17049:708cab19708d parent: 17048:28113212 user:Nate Coraor date:Mon Mar 16 22:50:21 2015 -0400 summary: Merge v15.03.1 to default It soun