Hi all,
I've been developing a Dockerfile and repositories to enable users to set up an
NGS forensics pipeline. So far so good, I can build the image (based on Bjoern
Gruening's excellent galaxy-stable Docker image) and incorporate all the
various tools I need, including custom ones with custo
On Mon, Jan 25, 2016 at 11:33 AM, Peter Cock wrote:
> Hello all,
>
> We're currently looking at changing our Galaxy setup to link user accounts
> with Linux user accounts for better cluster integration (running jobs as the
> actual user on SGE). As part of this, we've tried setting up a fresh
> in
Hi, Oksana
There are a few places to look and things to check in this situation.
*First*, are other visualizations working on your production instance? Do
you see the visualization icon/button and does the dropdown there have the
'charts' visualization on tabular files (like bed)?
On the admin s
Wow, great tip! This fixed it!
Thanks a bunch!
Matthias
> Op 26 jan. 2016, om 15:20 heeft Hans-Rudolf Hotz het volgende
> geschreven:
>
> Hi Matthias
>
>
> Make sure 'listing' is a list of (displayName,value,boolean)
>
> Though, there might be other errors as well
>
>
> Regards, Hans-Rud
Hi Matthias
Make sure 'listing' is a list of (displayName,value,boolean)
Though, there might be other errors as well
Regards, Hans-Rudolf
I am not sure, whether this
On 01/26/2016 01:22 PM, Matthias De Smet wrote:
Hi all,
I’m trying to develop a tool that lets you select a file on the serv
I’ve tracked down how the dbkey is getting lost on tool output datasets that
are part of a collection, but now I’m wondering if the tool’s
tag is lacking information about the dbkey and this is why
it is getting lost.
At least the code implies this. John, can you help here?
The populate_col
Hi all,
I’m trying to develop a tool that lets you select a file on the server. I’m
using the dynamic_options setting to let Galaxy render a dropdown list of
available file.
However, when I try to test the tool in its current form, I get the following
error:
galaxy.web.framework.decorators
Galaxy implements the job manager using rabbitmq and celery? Surely you
mean Galaxy *does not* implement celery (at this point). As far as I know
it is planned for the future.
Peter
On 25 January 2016 at 15:37, 杜云飞 wrote:
> Hi,
> We are reading the source code for galaxy job manager. We found
