[galaxy-dev] Missing dependency issue

Hello all, I'm having an issue with a missing dependency for readline 6.2. When I try to install or repair, I get the following error message: configure: error: in `/vectorbase/web/Galaxy/galaxy/data/galaxy/tmp/tmp-toolshed-mtd3fhemK/readline-6.2': configure: error: cannot compute suffix of

Re: [galaxy-dev] iRODS

The iRODS dev team is certainly interested in how people are using and want to use iRODS with Galaxy. Mikael, we would be happy to host the PDF and/or a guest blog post about making it work. And we can provide some assistance if there are difficulties on the iRODS side of this. Cheers, Dan

Re: [galaxy-dev] quota api error

Fabien, Thanks for the patch. I've opened a PR applying it in https://github.com/galaxyproject/galaxy/pull/1898. I'm thinking we might want to eventually refactor a little and add more general support for Decimal serialization, perhaps in the 'safe_dumps' machinery in galaxy.util.json, but this

Re: [galaxy-dev] iRODS

Please consider posting the content of your doc to the Galaxy Community Log Board , so that other people can find it. -Will On Wed, Mar 9, 2016 at 3:01 AM, Mikael Loaec < mikael.lo...@versailles.inra.fr> wrote: > Hi, > > @URGI, we have sucessfully

Re: [galaxy-dev] Setting job_working_directory on per-tool basis? (cuffdiff/cummerbund SQLite db error)

Just to follow up on my own questions, in case it's of interest to others: -- Re specifying different job working directories on a per-tool basis: Having spent a bit of time looking at the "advanced" sample job_conf.xml and also at the code for setting up and dispatching jobs, it looks to me

Re: [galaxy-dev] Error installing from main toolshed

Hi Anmol, It's a known temporary issue that we're working on right now. Should be resolved shortly. -Dannon On Wed, Mar 9, 2016 at 8:49 AM, Anmol Hemrom wrote: > Hi, > > I am getting error " HTTPError: HTTP Error 500: Internal Server Error" > while installing tools from

Re: [galaxy-dev] iRODS

Thank you for your message, I sent to you Mikael an email if you can semd your pdf. It is a good idea to see if in The galaxy dev team they can integrate iRODS for the next release. Best regards, Mohamed 2016-03-09 12:01 GMT+01:00 Mikael Loaec : > Hi, > >

[galaxy-dev] iRODS

Hi, @URGI, we have sucessfully tested connexion of galaxy instance with an iRODS. We have a pdf doc 67ko) explaining how we implement it if you want, but don't know if i can send attachement on this mailinglist ? We (URGI) are also very interresting in data pull/push tools for Galaxy-iRODS