Re: [galaxy-dev] Papers that cite Galaxy workflows

Thanks Dave, that’s just what I’m looking for, I found a few good examples of workflow citations. Steve — Department of Computing, Macquarie University http://web.science.mq.edu.au/~cassidy On 27 Jul 2016, at 6:29 AM, Dave Clements

Re: [galaxy-dev] DOS attack launched from our Galaxy instance

Hi Dannon, No, I never did figure out what happened. I couldn't find anything in our log files and Incapsula wasn't very helpful. Since it was just a testing/development instance I simply took it down and spun up a new instance with better security/passwords as I did have two Tomcat

Re: [galaxy-dev] Galaxy Blast

Hi Peter and Harry, When a tool is installed from the toolshed, the tool data table loc files are installed to the configured location and are then referenced in shed_tool_data_table_conf.xml. You should be able to modify the .loc files as referenced in this file, or, as you did, add a new

Re: [galaxy-dev] Papers that cite Galaxy workflows

Hi Steve, I don't have a precise answer to your question, but the Galaxy CiteULike archive might be helpful here. Any paper that uses, extends, or references Galaxy gets put in that library. Papers are tagged with one or more of 17 tags . There aren't

[galaxy-dev] Fwd: Immersive Approaches to Biological Data Visualization CSHL Course December 2016

Hello all, As many of you are interested in visualization I wanted to draw your attention to this NEW course on biological data visualization at Cold Spring Harbor, which is being led by some of our colleagues at the Texas Advanced Computing Center (who provide substantial support for Galaxy

Re: [galaxy-dev] Consuming dataset collections

Thanks for the questions - I have tried to revise the planemo docs to be more explicit about what collection identifiers are and where they come from (https://github.com/galaxyproject/planemo/commit/a811e652f23d31682f862f858dc792c1ef5a99ce).

[galaxy-dev] Fwd: Galaxy Blast

Hello all, Harry (CC'd) emailed me about some teething trouble getting nucleotide BLAST databases to appear in the drop down lists (see below). I suspect this is partly due to the partial data table sample that ships with Galaxy:

Re: [galaxy-dev] This job failed for reasons that could not be determined.

Hi Hans-Rudolf It happens with a number of tools. I will need to do some more testing to see if I can narrow it down further. Thanks for your help Ulf On 26/07/16 07:13, Hans-Rudolf Hotz wrote: > Hi Ulf > > > I don't think the two things are connected which each other. In the logs > of our