Re: [galaxy-dev] Errors when building Galaxy RNA-Seq Docker Image

Hi Stephen, this was due to a downtime of the TS as far as I can tell. But I took the opportunity to update the tools and include conda dependencies. Please pull again and rebuild. It works for me know. Thanks and let me know if anything is missing! Cheers, Bjoern Am 04.11.2016 um 19:17 schrieb

[galaxy-dev] Last Call for GMOD talks at PAG

Time is short! If you want to attend PAG and would like to present on a topic that would be of interest to the GMOD community, please send an abstract or at least a descriptive title to h...@gmod.org. Types of talks typically include updates on GMOD software projects, usa

[galaxy-dev] Errors when building Galaxy RNA-Seq Docker Image

I am trying to get this Docker image running: https://github.com/bgruening/galaxy-rna-seq If I let Docker download and start the container using this command: docker run -d -p 8080:80 bgruening/galaxy-rna-seq everything appears to work fine. However, if I clone the repo and try to build it mys

Re: [galaxy-dev] filter options

Sure, my combo-box is correctly filled with all options, but unfiltered. value, dbkey, name, path Le 04/11/2016 à 13:42, Nicola Soranzo a écrit : > Hi Vincent, > have you defined the dbindel table in config/tool_data_table_conf.xml ? > > Cheers, > Nicola > > On 04/11/16

Re: [galaxy-dev] filter options

Hi Vincent, have you defined the dbindel table in config/tool_data_table_conf.xml ? Cheers, Nicola On 04/11/16 08:09, Vincent Cahais wrote: Dear All, I try to filter options for a param linked to a datatable. I want to keep only options with the same dbkey as my input file. But i cannot make i

Re: [galaxy-dev] conda management of tools dependent on python3

Hi Wolfgang, I guess that the conda recipe should be updated to also specify - python >=3 in the requirements. Cheers, Nicola On 03/11/16 21:04, Wolfgang Maier wrote: I'm not quite sure if I understand you correctly, but let's see. The original tool wrapper stated python3 as a dependency. T

[galaxy-dev] filter options

Dear All, I try to filter options for a param linked to a datatable. I want to keep only options with the same dbkey as my input file. But i cannot make it work. ##dbindels # hg38hg38Human /data/genome/hg38/dbindel/Mills_and_1000G_gold_standard.i