I'm trying to use HISAT2 using a Docker-ized Galaxy
(bgruening/galaxy-rna-seq:dev - Galaxy 17.05). I installed the HISAT2 index
builder from the toolshed and built an index for the dm3 genome (resulting
in an index in /galaxy-central/tool-data/dm3/hisat2_index/dm3). When I try
and run HISAT2 with t
Hello Evan,
problematic cd command was in the file specified in environment_setup_file
set in config/galaxy.ini.
Best, Pavel
On Tue, Sep 26, 2017 at 6:30 PM, Evan Clark wrote:
>
> Which environment file did you modify we are having a similar issue and
> need to change the $galaxy_lib environme
Hello Christopher,
this is a longstanding bug that we recently fixed (initial description
https://github.com/galaxyproject/galaxy/issues/3519, fix
https://github.com/galaxyproject/galaxy/pull/4610 ),
This will be included in galaxy release 17.09, but the fix has also been
backported to relaese 16.
Dear all,
I noticed a bug in Galaxy (17.05), specifically when using "View all
histories" to switch between different histories.
It happened to me multiple times that the history I switched away from
was not shown anymore.
Searching for the history by name made it show up again, but still not
ide
