Re: [galaxy-dev] Expose Command Line in Galaxy

2018-07-11 Thread Matthias Enders
Dear Peter, we will re-create this problem with a new database in our instance, (to be sure on the reproducibility) and then raise an issue. Mit freundlichen Grüßen Matthias Enders --- [cid:image001.png@01D03960.8254BEE0]

Re: [galaxy-dev] Expose Command Line in Galaxy

2018-07-11 Thread Peter Cock
You may have found a new Galaxy bug then :( Could you log an issue here: https://github.com/galaxyproject/galaxy/issues (From what you've said, I don't think that this is a problem in the BLAST+ wrappers themselves) Peter On Wed, Jul 11, 2018 at 3:20 PM, Matthias Enders <

Re: [galaxy-dev] Expose Command Line in Galaxy

2018-07-11 Thread Matthias Enders
Dear Peter, the reloading of the blast *.loc files did not solve the Problem. Actually only a complete restart of the container solved the problem for us. Mit freundlichen Grüßen Matthias Enders ---

Re: [galaxy-dev] Expose Command Line in Galaxy

2018-07-11 Thread Peter Cock
Good. So is everything resolved now? Peter On Wed, Jul 11, 2018 at 3:08 PM, Matthias Enders < m.end...@german-seed-alliance.de> wrote: > Dear Peter, > > > > yes we did reload the Blast *.loc files using the admin interface. Our > Version is 18.05 (based on the Galaxy – Docker image). > > > >

Re: [galaxy-dev] Expose Command Line in Galaxy

2018-07-11 Thread Peter Cock
Is there anything in the Admin's interface to let you reload the BLAST *.loc files? If yes, did you try it but it didn't work? What version of Galaxy do you have? Peter On Tue, Jul 10, 2018 at 3:11 PM, Matthias Enders < m.end...@german-seed-alliance.de> wrote: > Dear Peter, > > > > up to our

Re: [galaxy-dev] Conda problems: Failed to activate conda environment

2018-07-11 Thread Van Wageningen, GERHARD [gerha...@sun.ac.za]
Hi - We have been trying to clean up the Galaxy tool deps ... have this interesting log as a result. Getting a lot of these: "DependencyException: Conda dependency seemingly installed but failed to build job environment." I am curious about the way files play in different locations in Galaxy: