it is merged into the codebase, you
can apply it as a patch (
https://github.com/galaxyproject/galaxy/pull/284.patch).
Please let us know if you encounter any issues using this new feature.
Thanks for using Galaxy,
Dan
On May 20, 2015, at 11:10 PM, Brian Haas bh...@broadinstitute.org
Hi Bjoern,
My galaxy/database/files/000/dataset_1_files/ directory contains a bunch of
files that I want to load into a genome viewer, including the target fasta
file, .fai, several bam and .bam.bai files, and some bed files among a few
others. I'm looking to wire up an IGV-web application (a
I've uploaded my simple example here:
https://github.com/brianjohnhaas/galaxy_composite_datatype_test
I can't seem to get it to bundle the output files no matter what I've
tried. Help is much appreciated. :)
best,
~brian
___
Please keep
Thanks, Peter! I've verified that I can get your code to work - bundling
the composite files. I'll keep plugging away at my little example and see
if I can figure out what's going awry.
more later. Thx again!
~brian
___
Please keep all
original email with attachments has made it to the list now,
http://dev.list.galaxyproject.org/difficulty-creating-composite-data-type-tp4667193.html
Title: difficulty creating composite data type
Peter
On Mon, May 18, 2015 at 2:25 PM, Brian Haas bh...@broadinstitute.org
wrote:
In the next
Hi Peter,
I'm actually more confused now that I was when I started... I was able to
get your code working, focusing on the 'makeblastdb' with a nucleotide
fasta file. I figured that experimenting with this example would lead to
some key insights, particularly by dropping certain files that are
-existing directory for the files you want
to be part of the dataset’s extra files path.
Then you create that directory and place the files you want within that
directory.
Thanks for using Galaxy,
Dan
On May 18, 2015, at 2:02 PM, Brian Haas bh...@broadinstitute.org wrote:
Hi Peter,
I'm
I've updated my code, which now generates the .extra_files directory:
https://github.com/brianjohnhaas/galaxy_composite_datatype_test
I'm now trying to get the
composite_type = 'auto_primary_file*' *to work, but all I'm getting is an
empty file. My module code simply includes:
class
Greetings.
Does anyone per chance have a simple working example of using composite
data types? I've gotten as far as I can with the galaxy documentation,
and I can't seem to get the additional files bundled into an extra files
directory.
(note, I have my example submitted w/ files attached,
