Re: [galaxy-dev] Subtleties of and escaping dollar signs

2015-09-14 Thread John Chilton
I would say it is a ways off yet, it doesn't even validate all proper XML yet, let alone have proper documentation tags. I was hoping adding the validation feature to planemo would spur some development on it, but it hasn't happened yet. Some people are trying it out though (https://github.com/gala

Re: [galaxy-dev] Subtleties of and escaping dollar signs

2015-09-09 Thread Peter Cock
Thanks John, I like that plan - is the XSD at the point where we can declare it in Galaxy Tool definition XML files s & validate them (via planemo or otherwise)? Peter On Wed, Sep 9, 2015 at 7:03 PM, John Chilton wrote: > Updated the wiki with this information. > https://wiki.galaxyproject.org/

Re: [galaxy-dev] Subtleties of and escaping dollar signs

2015-09-09 Thread John Chilton
Updated the wiki with this information. https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cversion_command.3E_tag_set. We got to get away from using the wiki page and start documenting this stuff in the XSD (https://github.com/JeanFred/Galaxy-XSD) directly and build the documentation

[galaxy-dev] Subtleties of and escaping dollar signs

2015-09-01 Thread Peter Cock
Hello all, I've just noticed that dollar signs for accessing environment variables must be escaped in the XML tag, but must not be escaped in the tag: https://github.com/peterjc/pico_galaxy/commit/4613a08139a3dfa07c3b0411ac8a91f55deabb74 I presume this is because is parsed as a Cheetah templa