l.edu>>
Date: Monday, February 27, 2017 at 12:26 PM
To:
"galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>"
<galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: [galaxy-dev] Galaxy and Torque
Hi
Hi all,
Is Torque still supported as a resource manager?
This page ( https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster )
mentioned the usage of Torque and how to set it up. However, the setup
instructions refer to a /script/scramble.py file which I assume interfaces with
eggs.
[mailto:jmchil...@gmail.com]
Envoyé : January-21-15 9:34 PM
À : Fernandez Edgar
Cc : galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Was hoping someone with an actual torque cluster would respond. I think the way
you would configure this might be for instance might
:
[galaxy-dev] galaxy and torque - resource allocation
Galaxy generally defers to the DRM (torque in your case) for dealing
with these things. In your job_conf.xml you can specify limits for memory
or CPUs and Galaxy will pass these along to the DRM at which point it is up
to the DRM to enforce
-dev] galaxy and torque - resource allocation
Hi Edgar,
I'd suggest checking your Apache logs to see if the upload was denied by the
server configuration (possibly for being too large).
Also, please try using the modal upload method to see whether the upload is
actually completing. This can
-...@bx.psu.edu
*Objet :* Re: [galaxy-dev] galaxy and torque - resource allocation
Hi Edgar,
I'd suggest checking your Apache logs to see if the upload was denied by
the server configuration (possibly for being too large).
Also, please try using the modal upload method to see whether the upload
: John Chilton; galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Hi Edgar,
Please make sure you have disabled the developer options `use_interactive` and
`debug` in galaxy.ini, then restart your Galaxy server and try the upload again.
Also, please try out
sincere apologies.
Cordialement / Regards,
Edgar Fernandez
De : Fernandez Edgar
Envoyé : January-22-15 12:35 PM
À : 'Nate Coraor'
Cc : John Chilton; galaxy-...@bx.psu.edu
Objet : RE: [galaxy-dev] galaxy and torque - resource allocation
Hello Nate,
I just tried the modal upload dialog and it says File
-- pbs_drmaa -- torque
Cordialement / Regards,
Edgar Fernandez
-Message d'origine-
De : John Chilton [mailto:jmchil...@gmail.com]
Envoyé : January-18-15 8:59 PM
À : Fernandez Edgar
Cc : galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Galaxy generally
Galaxy generally defers to the DRM (torque in your case) for dealing
with these things. In your job_conf.xml you can specify limits for
memory or CPUs and Galaxy will pass these along to the DRM at which
point it is up to the DRM to enforce these - details depend on if you
are using the PBS runner
/torque/lib/libtorque.so
python scripts/scramble.py -e pbs_python
Cordialement / Regards,
Edgar Fernandez
De : Rémy Dernat [mailto:remy...@gmail.com]
Envoyé : December-02-14 11:49 AM
À : Fernandez Edgar
Cc : John Chilton; galaxy-...@bx.psu.edu
Objet : Re: Re : [galaxy-dev] galaxy with torque
Sorry
[mailto:jmchil...@gmail.com]
Envoyé : November-25-14 12:07 PM
À : Fernandez Edgar
Cc : galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy with torque
I am not sure we have a walkthrough for Torque specifically - but if you have
Galaxy up and running and you can qsub commands to torque
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