[galaxy-dev] package_picard_1_136 installation error

2015-10-09 Thread Sven E. Templer
Hello list, installing the dependency package_picard_1_136 results in the following error: --- File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/install_manager.py", line 142, in install_and_build_package_via_fabric tool_dependency =

Re: [galaxy-dev] Installing Cairo into Gakaxy

2015-10-09 Thread Christian Brenninkmeijer
The cairo package in the testtool shed appears to have become corrupted. If you try to download https://testtoolshed.g2.bx.psu.edu/view/iuc/package_cairo_1_14_2/9fe5875b0ede or any tool that depends on that. The first page looks fine. The second pages as an extra dependency iuc/1.6.7 This

Re: [galaxy-dev] Puzzling error in program using Bioblend

2015-10-09 Thread mark fernandes (IFR)
And it’s Nicola for the win…! I deleted the two tabular files and re-uploaded them and my code works! ☺ Following on from this does this error state happen very often or have I just been unlucky? If the former is true, any suggestions on how best to trap it and report back to user to fix?

Re: [galaxy-dev] Installing Cairo into Gakaxy

2015-10-09 Thread Marius van den Beek
Hello Christian, this is known and fixed (https://github.com/galaxyproject/tools-iuc/pull/310 ), but the toolshed needs to be updated. I am thinking that this is not the only problem we currently have with cairo. I am working on the cairo issues right now and I'll give an update once the things

Re: [galaxy-dev] Installing Cairo into Gakaxy

2015-10-09 Thread Bjoern Gruening
Hi, ToolShed is updated. Ciao, BJoern Hello Christian, this is known and fixed (https://github.com/galaxyproject/tools-iuc/pull/310), but the toolshed needs to be updated. I am thinking that this is not the only problem we currently have with cairo. I am working on the cairo issues right

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-10-09 Thread Bjoern Gruening
Awesome, thanks Greg! On 09.10.2015 15:50, Greg Von Kuster wrote: I’ve finally had a chance to update the wiki - I’ve updated the following section to include information about the “dynamic_options=…” option for populating the select list: