[galaxy-dev] need help badly

2015-09-16 Thread Fernandez Edgar
Hello gents, I hope everyone is doing ok... I'm in need of your help so badly it's a little bit urgent: So my galaxy wasn't used in a while but the last time everything was working well: 1. The web-site was functional 2. The local handler upload the files locally on the master 3.

[galaxy-dev] Picard sam2fastq tool can output file including both single and paired reads?

2015-09-16 Thread Dooley, Damion
A researcher here was trying to use Galaxy Picard sam2fastq tool to generate a single fastq file from a sam file that has a mix of paired and unpaired data. She was thinking the second input on the sheet might control this: > Do you want to output a fastq file per read group (two fastq files p

[galaxy-dev] Galaxy Tools and Collections Remote Hackathon (Thursday and Friday)

2015-09-16 Thread John Chilton
Hello All, This is just a reminder that the Galaxy Tools and Collections Remote Hackathon will be tomorrow Thursday the 17th and Friday the 18th of September. More details can be found at: https://github.com/galaxyproject/tools-iuc/issues/239 This Github issue includes a big list of potential ta