Re: [galaxy-dev] Installing Tool Dependencies

2018-07-18 Thread Gudrun Mareike Amedick
Hi, I found the source of the tools. I think. tool_conf.xml.sample from release_18.05 contains this:   There are the four tools. If I delete the section entirely, they disappear from the dependencies list.  Since those tools weren't

Re: [galaxy-dev] Installing Tool Dependencies

2018-07-18 Thread Björn Grüning
Hi Gudrun, it seems this PASS tool is not yet available as Conda package. Do you know which ToolShed repo this is, you might want to contact the developer and ask for an upgrade to conda. > I don't know where they come from, I didn't install them explicitly. This is scary. Can you

Re: [galaxy-dev] Installing Tool Dependencies

2018-07-18 Thread Gudrun Mareike Amedick
Hi, I have those four tools, too. And they won't install properly.  I don't know where they come from, I didn't install them explicitly. They just popped up in my dependencies list. I've chosen to ignore them, since they don't seem to cause any trouble. But if anyone had this problem too and