[galaxy-dev] Galaxy Administrator Training, Jan 28 - Feb 1, Penn State University

Hello all, We are pleased to announce that* the 2019 Galaxy Admin Training will be offered January 28 through February 1 at Penn State University* (where the Galaxy Project got started over ten years ago). The workshop offers a 2 day

Re: [galaxy-dev] Using Singularity images to resolve dependences in Galaxy 18.05

Thanks Björn! So it is a job_conf thing rather than a dependency manager config thing? >From the job_conf.xml example I am not clear how it expects to find the container images? How is the search path configured, what naming scheme is used for containers? And does it "pull" containers

Re: [galaxy-dev] Using Singularity images to resolve dependences in Galaxy 18.05

Hi Peter, yes this is working :) Usegalaxy.eu is using it for a few tools. Documentation is here ;) https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L484 Also the Docker compose image is can also use Singularity if you want to reverse engineer it :)

[galaxy-dev] Using Singularity images to resolve dependences in Galaxy 18.05

Hi there Is it possible to use Singularity images to resolve dependencies in Galaxy 18.05? If so is there documentation somewhere? I have a Galaxy server where for at least some of the dependencies conda will not be a good option so I would like to be able to use singularity if at all possible.