[galaxy-dev] Problem with ChemicalToolBox dependencies

2015-08-13 Thread Léo Biscassi
-dev [1] https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox Has anyone had a similar experience? I am using ubuntu 14.04 Att. -- *Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter

Re: [galaxy-dev] Tool with multiple outputs.

2015-09-11 Thread Léo Biscassi
/rna_shapes/RNAShapes.xml#L218 > > Cheers, > Bjoern > > On 10.09.2015 23:01, Léo Biscassi wrote: > > Good afternoon people! > I am developing a tool that will have multiple outputs where they have to > be data sets in history. > Read the tutorial [1] and from it dev

Re: [galaxy-dev] Happy new year!

2016-01-01 Thread Léo Biscassi
tr. 15, K U1 808 > D-81377 Munich (Germany) > Tel: +49 89 4400 77499 > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2015-12-28 Thread Léo Biscassi
inspiration and > http://galaxy-iuc-standards.readthedocs.org/en/latest/ for best practices. > > Let us know if we can help. > > Thank you for using Galaxy. > > M. > > On Mon, Dec 28, 2015 at 12:58 PM Léo Biscassi <leo.bisca...@gmail.com> > wrote: > >> Hi folks, >

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2015-12-28 Thread Léo Biscassi
ng us know and looking forward to join forces here! > Bjoern > > > Am 28.12.2015 um 18:58 schrieb Léo Biscassi: > > Hi folks, > > > > I've been developing Galaxy tools for docking protein-compounds. My > docking > > program is Autodock Vina. In [1] is my r

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2015-12-28 Thread Léo Biscassi
far. We started with > the visualisation, because this was more fun :) > > Have a look at this board for more ideas: > https://trello.com/b/t9Wr8lSY/chemicaltoolbox > > Ciao, > Bjoern > > > Am 28.12.2015 um 19:29 schrieb Léo Biscassi: > > Hi Bjorn, thanks for reply.

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2015-12-28 Thread Léo Biscassi
Ok, thanks! Best regards, On Mon, Dec 28, 2015 at 5:36 PM Björn Grüning <bjoern.gruen...@gmail.com> wrote: > > > Am 28.12.2015 um 20:33 schrieb Léo Biscassi: > > Hi, > > Thanks all your attention. > > Although my project is functional prototype, its current v

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2015-12-28 Thread Léo Biscassi
is a great opportunity for me. Can you update the trello card with my project? Is it necessary for your organization? Best regards, On Mon, Dec 28, 2015 at 5:12 PM Björn Grüning <bjoern.gruen...@gmail.com> wrote: > > > Am 28.12.2015 um 20:06 schrieb Léo Biscassi: > > H

Re: [galaxy-dev] Doubts about Galaxy installation.

2016-06-27 Thread Léo Biscassi
ps://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ -- Best regards, *Léo Biscassi* ___ Please keep all replies on the list by using "repl

Re: [galaxy-dev] Doubts about Galaxy installation.

2016-06-27 Thread Léo Biscassi
ah ... one observation, the mercurial was substituted for git. If you need help I can help you in portuguese, send me one email. Att. On Mon, Jun 27, 2016 at 3:24 PM Léo Biscassi <leo.bisca...@gmail.com> wrote: > Hi Álvaro, welcome to the galaxy community! Brazilian guy here too! :)

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2016-01-30 Thread Léo Biscassi
Hi Bjorn, the branch model of ChemicalToolBoX is the same presented in [1]? Could guide me about it? [1] https://github.com/galaxyproject/galaxy/blob/dev/CONTRIBUTING.md Att. On Mon, Dec 28, 2015 at 5:04 PM Léo Biscassi <leo.bisca...@gmail.com> wrote: > Ok, thanks! > > Best rega

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2016-03-14 Thread Léo Biscassi
create a pull request in your repository for that we can fix the problem. Thank for the helps. I'm excited about this. Best regards, On Thu, Mar 10, 2016 at 5:51 PM Björn Grüning <bjoern.gruen...@gmail.com> wrote: > > > Am 10.03.2016 um 21:30 schrieb Léo Biscassi: > > Hi f

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2016-03-15 Thread Léo Biscassi
14, 2016 at 12:56 PM Léo Biscassi <leo.bisca...@gmail.com> wrote: > Hi, thanks for the reply. > About the branch model, ok! I'll follow the model presented. > About the error in planemo functional tests, the problem is that the > content of example output is not the same of o

Re: [galaxy-dev] Galaxy tools for docking protein-compounds.

2016-03-15 Thread Léo Biscassi
ll review it today, this looks really nice! > > > On 15.03.2016 08:28, Léo Biscassi wrote: > > Hi Bjorn, I've created the pull request [1] in your repository. I will be > grateful if you can assist me with the functional tests on the docking tool > and the final validation of the to

Re: [galaxy-dev] Problems with planemo functional tests

2016-03-04 Thread Léo Biscassi
424 > Place Georges Teissier 29680 Roscoff FRANCE > tel: +33 2 98 29 23 81 > ------ > > > > Le 3 mars 2016 à 07:31, Léo Biscassi <leo.bisca...@gmail.com> a écrit : > > Hi, the command that you suggested

[galaxy-dev] Problems with planemo functional tests

2016-03-02 Thread Léo Biscassi
magem2.jpg] *Figure 2:* Error [image: imagem3.jpg] *Figure 3: *Galaxy Path Planemo's version is 0.23.0. [1] https://planemo.readthedocs.org/en/latest/writing_standalone.html P.S: The command is utilized for same tool presented in tutorial. Att. -- *Léo Biscassi* Facebook - https://pt-br.fa

Re: [galaxy-dev] Problems with planemo functional tests

2016-03-02 Thread Léo Biscassi
> > planemo test /foo/bar/foo.xml > > or to a directory full of tools. > > planemo test /foo/bar > > Hope this helps, > Bjoern > > Am 03.03.2016 um 04:48 schrieb Léo Biscassi: > > Hi Folks, > > I tried follow this tutorial [1], but I have problems in execute the > >

Re: [galaxy-dev] Introducing Conda as a new standard for Galaxy tool dependencies

2016-09-01 Thread Léo Biscassi
ets > https://wiki.galaxyproject.org/ToolsWithDependenciesInSeparateRepositories > > Where on the wiki do people think would be best? > > Peter > > On Sun, Aug 28, 2016 at 9:41 PM, Léo Biscassi <leo.bisca...@gmail.com> > wrote: > > Nice job! I was really anxious for some documentation

[galaxy-dev] Problem with conda on galaxy 16.07

2016-09-01 Thread Léo Biscassi
nda/bin/conda: not found*', but the binary exist. Anyone can help me with this? Thanks in advance. -- Best regards, *Léo Biscassi* ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscrip

Re: [galaxy-dev] Introducing Conda as a new standard for Galaxy tool dependencies

2016-08-28 Thread Léo Biscassi
down and his constant support in making tools better in Galaxy – > Lance I hope with Conda you will have less pain with dependencies in > general! > > Last but not least I would like to thank the entire IUC and the over 50 > IUC contributors t

[galaxy-dev] Error on chemfp version 1.1p1 installation

2016-10-26 Thread Léo Biscassi
from URL http://chem-fingerprints.googlecode.com/files/chemfp-1.1p1.tar.gz: HTTP Error 404: Not Found This link is the same it's in cargo-port [1], but isn't working, can you help me? [1] https://github.com/galaxyproject/cargo-port/blob/master/urls.tsv#L396 -- Best re

Re: [galaxy-dev] Tool needs a particular file extension

2016-10-21 Thread Léo Biscassi
replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://gal