Re: [galaxy-dev] The January 2017 (17.01) Galaxy release is out. Now with Conda  for everybody!

Support for compressed FASTQ formats yay! > On 23 Feb 2017, at 22:25, Jennifer Hillman-Jackson > wrote: > > Dear Community, > > The Galaxy Committers team is pleased to announce the January 2017 (17.01) > release of Galaxy. > > Thanks for using Galaxy! > > >

[galaxy-dev] GIE security implications

Hi, what are the security implications of GIE? I saw the overview on the GIE page, but its not clear to me how dangerous they are. "They have complex interactions with numerous services, you’ll need to be a fairly competent SysAdmin to debug all of the possible problems that can occur during

Re: [galaxy-dev] my.galaxy/toolshed bioblend or install_tool_shed_tools swallows toolshed

at there is a problem. > I will have a look and let you know. > > Best, > Marius > > > On 30 August 2016 at 17:14, Tamir,Ido <ido.ta...@vbcf.ac.at> wrote: > Hi, > > a) > short version: > instead of: > http://gecko.imp.univie.ac.at/galtools/api/reposi

[galaxy-dev] my.galaxy/toolshed bioblend or install_tool_shed_tools swallows toolshed

Hi, a) short version: instead of: http://gecko.imp.univie.ac.at/galtools/api/repositories/get_ordered_installable_revisions?owner=itme=shrnaseqw the tool makes a request to: http://gecko.imp.univie.ac.at/api/repositories/get_ordered_installable_revisions?owner=itme=shrnaseqw (i.e. galtools is

Re: [galaxy-dev] ansible install tools: tools not in section

depend > on ephemeris shortly. > > Best, > Marius > > On 18 August 2016 at 14:00, Tamir,Ido <ido.ta...@vbcf.ac.at> wrote: > Hi, > I am trying to install tools with the galaxy-tools-playbook, but my tools > don’t end up in the sections. > I adde

[galaxy-dev] ansible install tools: tools not in section

Hi, I am trying to install tools with the galaxy-tools-playbook, but my tools don’t end up in the sections. I added section test in tool_conf.xml and test2 in shed_tool_conf.xml, and after a restart they are together in integrated_tool_panel.xml. Then I started the ansible playbook with

Re: [galaxy-dev] Docker for Mac

user and not to postgresql. > > Could it be that, since galaxy and other program were running in a docker > container, none of these users are known in the actual host environment? > > > Cheers, > > Philipp > > -Original Message- > From: Tamir,Ido [mailto:i

Re: [galaxy-dev] Docker for Mac

> > On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. > wrote: > > And I have the additional problem that I have to assign ownership rights to > the folders in /export and I get the following error: >  > > chown -R postgres:postgres /postgresql > chown:

Re: [galaxy-dev] GCC2016 will be streamed

great! > On 25 Jun 2016, at 22:15, Dave Clements wrote: > > Hello all, > > GCC2016 events started today with the coding and data hackathons. Training > runs tomorrow and Monday, and the meeting will run on Tuesday and Wednesday. > > In past years we have made

[galaxy-dev] Galaxy Interactive Environments: node 0.10.X - 0.11.X vintage necessary?

Hi, are the GIE still tied to an outdated node version? http://galaxy.readthedocs.io/en/master/admin/interactive_environments.html says: 0.10.X - 0.11.X vintage (https://github.com/erasche/galaxy/blob/gie-docs/doc/source/admin/interactive_environments.rst) but also: "We’re working on solutions