[galaxy-dev] Adding a5_pipeline.pl to galaxy

Hi All, I have a problem getting all the outputs in galaxy. My xml config file looks like this:   assemble microbial fastQ to fatsA   a5_pipeline.pl ${file1} ${file2}

Re: [galaxy-dev] Adding a5_pipeline.pl to galaxy

Hi, When you use ${output}, Galaxy creates a file in database/file//dataset_YYY.dat. Your script seem to need a directory or maybe a prefix like "output". So when the script generate its output filename. You can use the from_work_dir attribute of So, I guess something like that: > >