Re: [galaxy-dev] Plot-bamstats

2015-10-16 Thread Bjoern Gruening
On 16.10.2015 16:08, Jochen Bick wrote: Hej Jose, according to this https://wiki.galaxyproject.org/Events/GCC2015?action=AttachFile&do=get&target=S6_T1_interactive-environments.pdf http://bam.iobio.io/ is coming soon for galaxy. Ah, I feel the pressure :) Cheers Jochen On 16.10.2015 15:

Re: [galaxy-dev] Plot-bamstats

2015-10-16 Thread Jochen Bick
Hej Jose, according to this https://wiki.galaxyproject.org/Events/GCC2015?action=AttachFile&do=get&target=S6_T1_interactive-environments.pdf http://bam.iobio.io/ is coming soon for galaxy. Cheers Jochen On 16.10.2015 15:36, Jose Juan Almagro Armenteros wrote: > Hello, > > I have just installe

[galaxy-dev] Plot-bamstats

2015-10-16 Thread Jose Juan Almagro Armenteros
Hello, I have just installed the tool "samtools_stats" from the toolshed. In the synopsis says: "This tool runs the samtools stats command in the SAMtools toolkit, collecting statistics from BAM files. The output can be visualized using plot-bamstat ", but I haven't found any tool to visualize it