Thanks Hans-Rudolf. I didn't see the EBI SRA link before. But not sure
what will do what I want. I want to be able to plug in an SRA # and have
the tool download the data and prep it for analysis. Right now, it looks
like I need to click through the EBI website to get the data. I found a
tool in the toolshed but haven't had a chance to look at it. That is my
next step.
On Thu, Feb 5, 2015 at 3:18 AM, Hans-Rudolf Hotz h...@fmi.ch wrote:
Hi
Are you looking for any special GEO data, which is not mirrored at the
ENA? If not, you can probaly use the Get Data - EBI SRA tool, which
is part of the installation.
Also, have you looked at the toolshed? e.g.
https://toolshed.g2.bx.psu.edu/view/matt-shirley/ncbi_sra_toolkit
Regards, Hans-Rudolf
On 02/04/2015 04:44 PM, Ryan G wrote:
Do any tools exist to download GEO datasets from NCBI?
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