Thanks Björn!
So it is a job_conf thing rather than a dependency manager config thing?
>From the job_conf.xml example I am not clear how it expects to find the
container images? How is the search path configured, what naming scheme is
used for containers? And does it "pull" containers
Hi Peter,
yes this is working :)
Usegalaxy.eu is using it for a few tools.
Documentation is here ;)
https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L484
Also the Docker compose image is can also use Singularity if you want to
reverse engineer it :)
Hi there
Is it possible to use Singularity images to resolve dependencies in Galaxy
18.05? If so is there documentation somewhere?
I have a Galaxy server where for at least some of the dependencies conda
will not be a good option so I would like to be able to use singularity if
at all possible.