subject:"\[galaxy\-dev\] pbs_python can't be installed via scramble"

Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-25 Thread Makis Ladoukakis


Hello Will,

The second command returns the container.hpp inside the directory of the torque 
source which i used to install it:

find / -name container.hpp
/home/user/torque-5.1.1.2-1_18e4a5f1/src/include/container.hpp

I noticed there is also a log.h file there.

the first command doesn't return anything (I've search manually too, nothing 
inside /usr/local/include/).

How do I fix this? Shall I change the export command of PBS_PYTHON_INCLUDEDIR?

Thank you,
Makis



Date: Thu, 24 Sep 2015 08:31:07 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

And does find /usr/local/include -name container.hppor find / -name 
container.hppreturn torque/src/include/container.hpp ?
My guess is you installed binaries for Torque, but the scrambling requires the 
Torque source (or at least the header files form Torque).
-Will
On Thu, Sep 24, 2015 at 1:16 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello Will,

Thanks again for your reply. Yes I had already tried these but I got the same 
container.hpp error.

The only thing different in my case is that the names of the directories of the 
directories are a bit different:

export PBS_PYTHON_INCLUDEDIR=/usr/local/include/
export PBSCONFIG=/usr/local/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/lib/libtorque.so
python scripts/scramble.py -e pbs_python

Any ideas?

Kind regards,
Makis



Date: Wed, 23 Sep 2015 07:06:32 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

Hi Makis,
The thread I posted does have the exact same container.hpp error and proposes a 
solution.
Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your torque/include 
directory, as mentioned in that thread?
from the thread:export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/
export PBSCONFIG=/usr/local/torque/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/torque/lib/libtorque.so

-Will

On Wed, Sep 23, 2015 at 5:49 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello Will,

Thank you for your reply. I had already checked this thread before as I browsed 
through the mailing list for "pbs_python" issues. It doesn't have the same 
errors (can't locate log.h and when i provide it it wants the container.hpp ) 
and up to one point i've already followed the "rescrambling" of the pbs_python.

Anyone else had any experience with that?

Thank you,
Makis

Date: Tue, 22 Sep 2015 09:35:11 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

Here is an old thread that looks rather similar to your 
problems:https://www.mail-archive.com/galaxy-dev@lists.galaxyproject.org/msg00078.html

-Will

On Tue, Sep 22, 2015 at 2:43 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello everyone,

I'm trying to set up a Galaxy instance on a multi-core server in my university 
so according to the instructions here:

https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS

I installed Torque, changed the eggs.ini file by adding the 4.4.0. version of 
pbs_python

and tried to setup pbs_python via scramble:

LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

When I did that I got the error:

Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir via 
PBS_PYTHON_INCLUDEDIR variable)
Traceback (most recent call last):
  File "scripts/scramble.py", line 50, in 
egg.scramble()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in scramble
self.run_scramble_script()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in 
run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( 
sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed 
for pbs_python 4.4.0

so I did some digging around and found that the file I need is in 

/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/

(please correct me if I am wrong)

So I tried again using:

 
PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
 LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

but then I got the error:

In file included from src/C++/pbs_ifl.h:90:0,
 from src/C++/pbs_wrap.cxx:2978:
/usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp: No 
such file or directory
 #include "container.hpp"


Can someone help me please?

Kind regards,
Makis

  

___

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Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-25 Thread Makis Ladoukakis

Hello again,

So I figured out a workaround. I had to downgrade torque to version 4.2.10 
(that is the latest version of torque that doesn't have any compatibility 
issues with pbs_python 4.4.0).

Then i used:

export PBS_PYTHON_INCLUDEDIR=/home/user/torque-4.2.10/src/include/

to include... well... the include directory

So the pbs_python egg for 4.4.0. was created succesfully.

But then after running galaxy:

GALAXY_RUN_ALL=1 sh run.sh --daemon

I got another error:

galaxy.jobs.runners DEBUG 2015-09-25 15:08:22,030 Loading DRMAARunner with 
params: {'invalidjobexception_retries': '0', 'invalidjobexception_state': 'ok', 
'internalexception_retries': '0', 'internalexception_state': 'ok'}
galaxy.jobs.runners.state_handler_factory DEBUG 2015-09-25 15:08:22,030 Loaded 
'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit
Traceback (most recent call last):
  File "/home/galaxy/galaxy/lib/galaxy/webapps/galaxy/buildapp.py", line 51, in 
app_factory
app = galaxy.app.UniverseApplication( global_conf=global_conf, **kwargs )
  File "/home/galaxy/galaxy/lib/galaxy/app.py", line 142, in __init__
self.job_manager = manager.JobManager( self )
  File "/home/galaxy/galaxy/lib/galaxy/jobs/manager.py", line 23, in __init__
self.job_handler = handler.JobHandler( app )
  File "/home/galaxy/galaxy/lib/galaxy/jobs/handler.py", line 32, in __init__
self.dispatcher = DefaultJobDispatcher( app )
  File "/home/galaxy/galaxy/lib/galaxy/jobs/handler.py", line 722, in __init__
self.job_runners = self.app.job_config.get_job_runner_plugins( 
self.app.config.server_name )
  File "/home/galaxy/galaxy/lib/galaxy/jobs/__init__.py", line 667, in 
get_job_runner_plugins
rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 
'kwds', {} ) )
  File "/home/galaxy/galaxy/lib/galaxy/jobs/runners/drmaa.py", line 62, in 
__init__
drmaa = __import__( "drmaa" )
  File "/home/galaxy/galaxy/eggs/drmaa-0.7.6-py2.7.egg/drmaa/__init__.py", line 
48, in 
ZipImportError: bad local file header in 
/home/galaxy/galaxy/eggs/drmaa-0.7.6-py2.7.egg
Removing PID file handler0.pid

Has anyone ever encountered that?

Thank you,
Makis


From: makis4e...@hotmail.com
To: who...@lygos.com
Date: Fri, 25 Sep 2015 12:07:02 +0300
CC: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble





Hello Will,

The second command returns the container.hpp inside the directory of the torque 
source which i used to install it:

find / -name container.hpp
/home/user/torque-5.1.1.2-1_18e4a5f1/src/include/container.hpp

I noticed there is also a log.h file there.

the first command doesn't return anything (I've search manually too, nothing 
inside /usr/local/include/).

How do I fix this? Shall I change the export command of PBS_PYTHON_INCLUDEDIR?

Thank you,
Makis



Date: Thu, 24 Sep 2015 08:31:07 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

And does find /usr/local/include -name container.hppor find / -name 
container.hppreturn torque/src/include/container.hpp ?
My guess is you installed binaries for Torque, but the scrambling requires the 
Torque source (or at least the header files form Torque).
-Will
On Thu, Sep 24, 2015 at 1:16 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello Will,

Thanks again for your reply. Yes I had already tried these but I got the same 
container.hpp error.

The only thing different in my case is that the names of the directories of the 
directories are a bit different:

export PBS_PYTHON_INCLUDEDIR=/usr/local/include/
export PBSCONFIG=/usr/local/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/lib/libtorque.so
python scripts/scramble.py -e pbs_python

Any ideas?

Kind regards,
Makis



Date: Wed, 23 Sep 2015 07:06:32 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

Hi Makis,
The thread I posted does have the exact same container.hpp error and proposes a 
solution.
Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your torque/include 
directory, as mentioned in that thread?
from the thread:export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/
export PBSCONFIG=/usr/local/torque/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/torque/lib/libtorque.so

-Will

On Wed, Sep 23, 2015 at 5:49 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello Will,

Thank you for your reply. I had already checked this thread before as I browsed 
through the mailing list for "pbs_python" issues. It doesn't have the same 
errors (can't locate log.h and when i provide it it wants the container.hpp ) 
and up to one point i've already followed the "rescrambling" of the pbs_python

Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-24 Thread Makis Ladoukakis

Hello Will,

Thanks again for your reply. Yes I had already tried these but I got the same 
container.hpp error.

The only thing different in my case is that the names of the directories of the 
directories are a bit different:

export PBS_PYTHON_INCLUDEDIR=/usr/local/include/
export PBSCONFIG=/usr/local/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/lib/libtorque.so
python scripts/scramble.py -e pbs_python

Any ideas?

Kind regards,
Makis



Date: Wed, 23 Sep 2015 07:06:32 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

Hi Makis,
The thread I posted does have the exact same container.hpp error and proposes a 
solution.
Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your torque/include 
directory, as mentioned in that thread?
from the thread:export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/
export PBSCONFIG=/usr/local/torque/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/torque/lib/libtorque.so

-Will

On Wed, Sep 23, 2015 at 5:49 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello Will,

Thank you for your reply. I had already checked this thread before as I browsed 
through the mailing list for "pbs_python" issues. It doesn't have the same 
errors (can't locate log.h and when i provide it it wants the container.hpp ) 
and up to one point i've already followed the "rescrambling" of the pbs_python.

Anyone else had any experience with that?

Thank you,
Makis

Date: Tue, 22 Sep 2015 09:35:11 -0700
Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
From: who...@lygos.com
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org

Here is an old thread that looks rather similar to your 
problems:https://www.mail-archive.com/galaxy-dev@lists.galaxyproject.org/msg00078.html

-Will

On Tue, Sep 22, 2015 at 2:43 AM, Makis Ladoukakis <makis4e...@hotmail.com> 
wrote:



Hello everyone,

I'm trying to set up a Galaxy instance on a multi-core server in my university 
so according to the instructions here:

https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS

I installed Torque, changed the eggs.ini file by adding the 4.4.0. version of 
pbs_python

and tried to setup pbs_python via scramble:

LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

When I did that I got the error:

Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir via 
PBS_PYTHON_INCLUDEDIR variable)
Traceback (most recent call last):
  File "scripts/scramble.py", line 50, in 
egg.scramble()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in scramble
self.run_scramble_script()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in 
run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( 
sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed 
for pbs_python 4.4.0

so I did some digging around and found that the file I need is in 

/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/

(please correct me if I am wrong)

So I tried again using:

 
PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
 LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

but then I got the error:

In file included from src/C++/pbs_ifl.h:90:0,
 from src/C++/pbs_wrap.cxx:2978:
/usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp: No 
such file or directory
 #include "container.hpp"


Can someone help me please?

Kind regards,
Makis

  

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Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-23 Thread Will Holtz

Hi Makis,

The thread I posted does have the exact same container.hpp error and
proposes a solution.

Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your
torque/include directory, as mentioned in that thread?

from the thread:

export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/
export PBSCONFIG=/usr/local/torque/bin/pbs-config
export LIBTORQUE_DIR=/usr/local/torque/lib/libtorque.so


-Will


On Wed, Sep 23, 2015 at 5:49 AM, Makis Ladoukakis <makis4e...@hotmail.com>
wrote:

> Hello Will,
>
> Thank you for your reply. I had already checked this thread before as I
> browsed through the mailing list for "pbs_python" issues. It doesn't have
> the same errors (can't locate log.h and when i provide it it wants the
> container.hpp ) and up to one point i've already followed the
> "rescrambling" of the pbs_python.
>
> Anyone else had any experience with that?
>
> Thank you,
> Makis
>
> ----------
> Date: Tue, 22 Sep 2015 09:35:11 -0700
> Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
> From: who...@lygos.com
> To: makis4e...@hotmail.com
> CC: galaxy-dev@lists.galaxyproject.org
>
>
> Here is an old thread that looks rather similar to your problems:
>
> https://www.mail-archive.com/galaxy-dev@lists.galaxyproject.org/msg00078.html
>
> -Will
>
>
> On Tue, Sep 22, 2015 at 2:43 AM, Makis Ladoukakis <makis4e...@hotmail.com>
> wrote:
>
> Hello everyone,
>
> I'm trying to set up a Galaxy instance on a multi-core server in my
> university so according to the instructions here:
>
> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS
>
> I installed Torque, changed the eggs.ini file by adding the 4.4.0. version
> of pbs_python
>
> and tried to setup pbs_python via scramble:
>
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> When I did that I got the error:
>
> Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir
> via PBS_PYTHON_INCLUDEDIR variable)
> Traceback (most recent call last):
>   File "scripts/scramble.py", line 50, in 
> egg.scramble()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in
> scramble
> self.run_scramble_script()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in
> run_scramble_script
> raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % (
> sys._getframe().f_code.co_name, self.name, self.version ) )
> galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build
> failed for pbs_python 4.4.0
>
> so I did some digging around and found that the file I need is in
>
> /scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
>
> (please correct me if I am wrong)
>
> So I tried again using:
>
>  
> PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> but then I got the error:
>
> In file included from src/C++/pbs_ifl.h:90:0,
>  from src/C++/pbs_wrap.cxx:2978:
> /usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp:
> No such file or directory
>  #include "container.hpp"
>
>
> Can someone help me please?
>
> Kind regards,
> Makis
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
>
>
>
> --
> The information contained in this e-mail message or any attachment(s) may
> be confidential and/or privileged and is intended for use only by the
> individual(s) to whom this message is addressed.  If you are not the
> intended recipient, any dissemination, distribution, copying, or use is
> strictly prohibited.  If you receive this e-mail message in error, please
> e-mail the sender at who...@lygos.com and destroy this message and remove
> the transmission from all computer directories (including e-mail servers).
>
> Please consider the environment before printing this email.
>



-- 
The information contained in this e-mail message or any attachment(s) may
be confidential and/or privileged and is intended for use only by the
individual(s) to whom this message is addressed.  If you are not the
intended recipient, any dissemination, distribution, copying, or use is
strictly prohibited.  I

Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-22 Thread Will Holtz

Here is an old thread that looks rather similar to your problems:
https://www.mail-archive.com/galaxy-dev@lists.galaxyproject.org/msg00078.html

-Will


On Tue, Sep 22, 2015 at 2:43 AM, Makis Ladoukakis 
wrote:

> Hello everyone,
>
> I'm trying to set up a Galaxy instance on a multi-core server in my
> university so according to the instructions here:
>
> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS
>
> I installed Torque, changed the eggs.ini file by adding the 4.4.0. version
> of pbs_python
>
> and tried to setup pbs_python via scramble:
>
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> When I did that I got the error:
>
> Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir
> via PBS_PYTHON_INCLUDEDIR variable)
> Traceback (most recent call last):
>   File "scripts/scramble.py", line 50, in 
> egg.scramble()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in
> scramble
> self.run_scramble_script()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in
> run_scramble_script
> raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % (
> sys._getframe().f_code.co_name, self.name, self.version ) )
> galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build
> failed for pbs_python 4.4.0
>
> so I did some digging around and found that the file I need is in
>
> /scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
>
> (please correct me if I am wrong)
>
> So I tried again using:
>
>  
> PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> but then I got the error:
>
> In file included from src/C++/pbs_ifl.h:90:0,
>  from src/C++/pbs_wrap.cxx:2978:
> /usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp:
> No such file or directory
>  #include "container.hpp"
>
>
> Can someone help me please?
>
> Kind regards,
> Makis
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>



-- 
The information contained in this e-mail message or any attachment(s) may
be confidential and/or privileged and is intended for use only by the
individual(s) to whom this message is addressed.  If you are not the
intended recipient, any dissemination, distribution, copying, or use is
strictly prohibited.  If you receive this e-mail message in error, please
e-mail the sender at who...@lygos.com and destroy this message and remove
the transmission from all computer directories (including e-mail servers).

Please consider the environment before printing this email.
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
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[galaxy-dev] pbs_python can't be installed via scramble

2015-09-22 Thread Makis Ladoukakis

Hello everyone,

I'm trying to set up a Galaxy instance on a multi-core server in my university 
so according to the instructions here:

https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS

I installed Torque, changed the eggs.ini file by adding the 4.4.0. version of 
pbs_python

and tried to setup pbs_python via scramble:

LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

When I did that I got the error:

Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir via 
PBS_PYTHON_INCLUDEDIR variable)
Traceback (most recent call last):
  File "scripts/scramble.py", line 50, in 
egg.scramble()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in scramble
self.run_scramble_script()
  File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in 
run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( 
sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed 
for pbs_python 4.4.0

so I did some digging around and found that the file I need is in 

/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/

(please correct me if I am wrong)

So I tried again using:

 
PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
 LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python

but then I got the error:

In file included from src/C++/pbs_ifl.h:90:0,
 from src/C++/pbs_wrap.cxx:2978:
/usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp: No 
such file or directory
 #include "container.hpp"


Can someone help me please?

Kind regards,
Makis

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Re: [galaxy-dev] pbs_python can't be installed via scramble

Re: [galaxy-dev] pbs_python can't be installed via scramble

Re: [galaxy-dev] pbs_python can't be installed via scramble

Re: [galaxy-dev] pbs_python can't be installed via scramble

Re: [galaxy-dev] pbs_python can't be installed via scramble

[galaxy-dev] pbs_python can't be installed via scramble

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