Hi Nikhil,
Have a look at
https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_dbkeys_all_fasta
to add a new genome/fasta. Once you have the genome entry, then you can use
additional Data Manager to make tool specific (bwa, samtools, etc) indexes.
Thanks for using Galaxy,
Dan
On Apr 2, 2015, at 5:41 AM, Nikhil Joshi najo...@ucdavis.edu wrote:
Of course this would be for a local install of galaxy.
On Thu, Apr 2, 2015 at 2:29 AM, Nikhil Joshi najo...@ucdavis.edu wrote:
Hi all,
Is it possible to use a DataManager (or anything) to allow a user (or admin)
to upload their genome of choice and have it be indexed and be used as a
built-in/cached genome *without* having to go on the command-line? I.e., only
using the Galaxy interface?
- Nik.
--
Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)
--
Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
