Hi everyone,
I'm currently trying a new galaxy install with the webapp and the job
runner running on different machines, sharing a nfs volume where the
galaxy files are, and another one where the data is supposed to be
stored, as specified in the file_path and new_file_path values in the
universe_
Hello Peter,
On Mar 18, 2011, at 11:26 AM, Peter Cock wrote:
>
> I've just updated my test Galaxy instance to get the 5221:b5ecb8f4839d
> fix, and I now get a different behaviour - still an error state.
>
> Data type: auto
> Build: ?
> Miscellaneous information: The uploaded files need groomin
On Wed, Mar 23, 2011 at 4:24 PM, Greg Von Kuster wrote:
> Hello Peter,
>
> On Mar 18, 2011, at 11:26 AM, Peter Cock wrote:
>>
>> Having checked my BAM files with samtools, I can confirm they
>> don't have the SO header.
>>
>> samtools view -H myfile.bam | grep "SO:"
>>
>> They were generated with
