Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Nate Coraor
On Jan 6, 2012, at 3:49 AM, sarah Maman wrote: > Dear, > > In your tarball (http://dist.g2.bx.psu.edu/galaxy-dist.b258de1e6cea.tar.gz), > I have found the repository named "galaxy-dist" but I did not found > "galaxy-central" and "limp". Could you please explain me where I could find > these re

Re: [galaxy-dev] Status on importing BAM file into Library does not update

2012-01-06 Thread Nate Coraor
On Jan 5, 2012, at 2:48 PM, Ryan Golhar wrote: > On Thu, Jan 5, 2012 at 11:59 AM, Nate Coraor wrote: > On Jan 5, 2012, at 11:41 AM, Ryan Golhar wrote: > > > I set it to run on the cluster: > > > > [galaxy@bic galaxy-dist]$ grep upload1 universe_wsgi.runner.ini > > #upload1 = local:/// > > Could

Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Bassam Tork
Hi, I want to stop receiving emails to this account(bas...@gmail.com), and want to use another email for galaxy developers list. How can I replace this email account with another? Thanks, Basam. On Thu, Jan 5, 2012 at 10:52 AM, sarah Maman wrote: > Dear all, > > I would like to get the latest cop

[galaxy-dev] error on viewing workflow details via API

2012-01-06 Thread Leon Mei
Hi, I received an error when I was trying to view the details of existing workflows through API. I can see 4 workflows owned by myself successfully. But viewing the details of any workflow got me a 500 error. ./display.py http://galaxy.nbic.nl/galaxy/api/workflows Collection Members --

Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Nate Coraor
On Jan 6, 2012, at 11:25 AM, Bassam Tork wrote: > Hi, > I want to stop receiving emails to this account(bas...@gmail.com), and want > to use another email for galaxy developers list. How can I replace this email > account with another? > Thanks, > Basam. Hi Basam, Please use the interface at:

Re: [galaxy-dev] Status on importing BAM file into Library does not update

2012-01-06 Thread Ryan Golhar
> > > This indicates that set_meta is running locally, in the runner process. > Can you make sure there's not a typo in your config? The other > possibility is that external metadata setting failed and it's being retried > internally (if that was true, you'd see messages indicated such in the > s

Re: [galaxy-dev] Tool shed and datatypes

2012-01-06 Thread Greg Von Kuster
Hello Jim, Thanks for sending your converter. I've committed change set 6484:4fdceec512f5 to our central repository. I now have things working for properly handling proprietary datatype converters and indexers. I've also added the following paragraph to the tool shed wiki. It doesn't apply

[galaxy-dev] Galaxy @ PAG 2012

2012-01-06 Thread Dave Clements
Hello all, Plant and Animal Genome XX (PAG2012) starts in San Diego on January 14. If you are attending PAG then you will have (at least) a half-dozen opportunities to learn more about Galaxy and how it is being used to support research. There will be workshops introducing Galaxy, and on deploying