[galaxy-dev] Problem capturing output from RUM

I'm writing a wrapper for RUM (RNA-Seq Unified Mapper). For those of you who aren't familiar with RUM, it produces several output files. I'm trying to capture 12 of those files in Galaxy. Here is one of the 12 nodes: All 12 nodes have similar syntax. When I try to run RUM from Galaxy, it's ob

Re: [galaxy-dev] directories as inputs/dataset file extensions

On Apr 5, 2012, at 8:45 AM, Daniel Blankenberg wrote: > If you are designing a new datatype for a (set of) tool(s) and this datatype > requires a bunch of files to be in a directory and these files are generally > only useful when they are bundled together as a single unit (i.e. you > wouldn't

[galaxy-dev] tag

Hi all, This is a question about tag. How can we pass the repeat tag parameters nested within another repeat tag to command tag? For example,I have a front end like the following How can I access the pa