Re: [galaxy-dev] A new tool_data_table_conf.xml created under tool-data directory

2012-11-11 Thread Derrick Lin
Fantastic! Thanks for all the details Greg. Cheers, Derrick On Fri, Nov 9, 2012 at 10:55 PM, Greg Von Kuster wrote: > Hi Derrick, > > On Nov 9, 2012, at 12:56 AM, Derrick Lin wrote: > > For issue 1), so I think it's safe to remove the > tool-data/tool_data_table_conf.xml > & tool-data/tool_da

[galaxy-dev] How to get a compressed output in the history

2012-11-11 Thread Philipe Moncuquet
Hi dev, I have written a perl script to perform some complex demultiplexing of reads. It works well on my computer but the integration to Galaxy is a bit tricky since it's the first time for me. At one point my perl script generates a bunch of fasta files, I want all this fasta files to be compres

Re: [galaxy-dev] How to get a compressed output in the history

2012-11-11 Thread Peter Cock
On Sun, Nov 11, 2012 at 10:11 PM, Philipe Moncuquet wrote: > Hi dev, > > I have written a perl script to perform some complex demultiplexing of > reads. It works well on my computer but the integration to Galaxy is a bit > tricky since it's the first time for me. > At one point my perl script gene

[galaxy-dev] How to make toolshed tool to create dummy env.sh

2012-11-11 Thread Kevin Y
Hi dev list, What is the simplest xml I can put into a tool_dependencies.xml for it to create a dummy env.sh in tool-dependency/tool/version/ /awef234243/env.sh And will this be sourced each time. Or does the dependency need to be some sort of "successfully install" status for it to be source